LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g03712	ATGACAGAAATTGAAATTCCTCAATTTTTTCTTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGACAACCGTTACGGGGATAACCTACGACAGAGAAAGCATCGAACATTGGTTGCTAAAAGCGAAAGATTGCACGTGTCCAATTACAAAGCAACCATTGCCACGAAGCTCAGAGTTCTTAACCCCAAACCACACGCTTCGGAGGCTGATCCAAGCGTGGTGTTCAGCAAATGAAGCCAATGGCGTAGATCAAATTCCAACCCCGAAATCCCCTCTTAGCAATGCCAACGTCGAGAAGCTCGTGAAGGATCTCGAAGTTCCTCGTCGCTTTCAAAACGCATTGGAGAAACTGCACGCGCTTGCAATAGAGAACGAGAGGAACAGAAGGTGCATGGCTTCTGCGGGTGTAGCAGAAGCTATGGTGCACGTGATCACAAAGAGGTTCAAGCAAGGTAATAACAAAACGACATCGTGTCTCGAAGAAGCTCTGAGAATTCTTCGTTTGCTTTGGAGCAGTGCCAATATGGTCGACAACAACAACATGAAGCGCATGGTGGGTGAGAACTTTGACTTTCTCAACTCTTTGACTTGGCTTTTGCAGCTTCAAACCAAGAACAAGGTCAAGGTAATAAACGAAGCAATGCCTATATTGAAATTGGTAATTGAAGCCAAAGACTCAACCCCTTTAGGGAACTTAAAGCTTGAATTCTTCAGAGTTGTTGTGAGTGTGATGAGAAACAGAGAACTCTCTCAGCAAGCTATTAAATCCGCGTTGCATGTGCTTATAGAAACGTGCCCTTTGGGGAGGAATAGAATGAAGATAGTGGAAGCAGGTGCAGTGGTGGAACTCATTGAACTTGCACTTGAAAAACCAGAAAAGAATATGACAGAACTCACATTTATCCTTTTGGCGCATCTGTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTGCAACATGCTGCAGGCATTGCTGTGGTTTCTAAGAGGATCCTTAGGGTTTCACCAACCACCGATGATCGAGCGCTTCATATATTTTCCTTGGTTTCTAAGTTCTCGGCTTCGAATGAGGTTGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGTTGCAAGCAGATTGTGCTTCCTATTTGAAAGAAAAGGCAAGAGGTGTACTTAGGTTACACTCCAAAACATGGAACGATTCTCCCTGTATTCAAGTATATTTGTTAACCAGATTCCAAAGGTGA	1248	0.4431	MTEIEIPQFFLCPISLQIMKDPVTTVTGITYDRESIEHWLLKAKDCTCPITKQPLPRSSEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNANVEKLVKDLEVPRRFQNALEKLHALAIENERNRRCMASAGVAEAMVHVITKRFKQGNNKTTSCLEEALRILRLLWSSANMVDNNNMKRMVGENFDFLNSLTWLLQLQTKNKVKVINEAMPILKLVIEAKDSTPLGNLKLEFFRVVVSVMRNRELSQQAIKSALHVLIETCPLGRNRMKIVEAGAVVELIELALEKPEKNMTELTFILLAHLCSCADGREQFLQHAAGIAVVSKRILRVSPTTDDRALHIFSLVSKFSASNEVVQEMLRVGAVSKLCMVLQADCASYLKEKARGVLRLHSKTWNDSPCIQVYLLTRFQR	415

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g03712	415	PANTHER	WDSAM1 PROTEIN	3	406	IPR045185	GO:0061630
	Pumo4g03712	415	Gene3D	-	101	404	IPR011989	-
	Pumo4g03712	415	Pfam	U-box domain	6	80	IPR003613	GO:0004842\|GO:0016567
	Pumo4g03712	415	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	87	IPR013083	-
	Pumo4g03712	415	SUPERFAMILY	ARM repeat	111	392	IPR016024	-
	Pumo4g03712	415	SUPERFAMILY	RING/U-box	3	84	-	-
	Pumo4g03712	415	ProSiteProfiles	U-box domain profile.	5	82	IPR003613	GO:0004842\|GO:0016567
	Pumo4g03712	415	CDD	RING-Ubox_PUB	7	58	IPR045210	-
	Pumo4g03712	415	SMART	Ubox_2	9	75	IPR003613	GO:0004842\|GO:0016567

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g03712	Pumo-Chr4	76822495	76823742	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g03712	3	405	U-box Gene Family	AT2G35930	42.998	1.07e-108	324

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g03712	-		-	gmx:100787419	759.214

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