Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03712 ATGACAGAAATTGAAATTCCTCAATTTTTTCTTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGACAACCGTTACGGGGATAACCTACGACAGAGAAAGCATCGAACATTGGTTGCTAAAAGCGAAAGATTGCACGTGTCCAATTACAAAGCAACCATTGCCACGAAGCTCAGAGTTCTTAACCCCAAACCACACGCTTCGGAGGCTGATCCAAGCGTGGTGTTCAGCAAATGAAGCCAATGGCGTAGATCAAATTCCAACCCCGAAATCCCCTCTTAGCAATGCCAACGTCGAGAAGCTCGTGAAGGATCTCGAAGTTCCTCGTCGCTTTCAAAACGCATTGGAGAAACTGCACGCGCTTGCAATAGAGAACGAGAGGAACAGAAGGTGCATGGCTTCTGCGGGTGTAGCAGAAGCTATGGTGCACGTGATCACAAAGAGGTTCAAGCAAGGTAATAACAAAACGACATCGTGTCTCGAAGAAGCTCTGAGAATTCTTCGTTTGCTTTGGAGCAGTGCCAATATGGTCGACAACAACAACATGAAGCGCATGGTGGGTGAGAACTTTGACTTTCTCAACTCTTTGACTTGGCTTTTGCAGCTTCAAACCAAGAACAAGGTCAAGGTAATAAACGAAGCAATGCCTATATTGAAATTGGTAATTGAAGCCAAAGACTCAACCCCTTTAGGGAACTTAAAGCTTGAATTCTTCAGAGTTGTTGTGAGTGTGATGAGAAACAGAGAACTCTCTCAGCAAGCTATTAAATCCGCGTTGCATGTGCTTATAGAAACGTGCCCTTTGGGGAGGAATAGAATGAAGATAGTGGAAGCAGGTGCAGTGGTGGAACTCATTGAACTTGCACTTGAAAAACCAGAAAAGAATATGACAGAACTCACATTTATCCTTTTGGCGCATCTGTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTGCAACATGCTGCAGGCATTGCTGTGGTTTCTAAGAGGATCCTTAGGGTTTCACCAACCACCGATGATCGAGCGCTTCATATATTTTCCTTGGTTTCTAAGTTCTCGGCTTCGAATGAGGTTGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGTTGCAAGCAGATTGTGCTTCCTATTTGAAAGAAAAGGCAAGAGGTGTACTTAGGTTACACTCCAAAACATGGAACGATTCTCCCTGTATTCAAGTATATTTGTTAACCAGATTCCAAAGGTGA 1248 0.4431 MTEIEIPQFFLCPISLQIMKDPVTTVTGITYDRESIEHWLLKAKDCTCPITKQPLPRSSEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNANVEKLVKDLEVPRRFQNALEKLHALAIENERNRRCMASAGVAEAMVHVITKRFKQGNNKTTSCLEEALRILRLLWSSANMVDNNNMKRMVGENFDFLNSLTWLLQLQTKNKVKVINEAMPILKLVIEAKDSTPLGNLKLEFFRVVVSVMRNRELSQQAIKSALHVLIETCPLGRNRMKIVEAGAVVELIELALEKPEKNMTELTFILLAHLCSCADGREQFLQHAAGIAVVSKRILRVSPTTDDRALHIFSLVSKFSASNEVVQEMLRVGAVSKLCMVLQADCASYLKEKARGVLRLHSKTWNDSPCIQVYLLTRFQR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03712 415 PANTHER WDSAM1 PROTEIN 3 406 IPR045185 GO:0061630
Pumo4g03712 415 Gene3D - 101 404 IPR011989 -
Pumo4g03712 415 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Pumo4g03712 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Pumo4g03712 415 SUPERFAMILY ARM repeat 111 392 IPR016024 -
Pumo4g03712 415 SUPERFAMILY RING/U-box 3 84 - -
Pumo4g03712 415 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Pumo4g03712 415 CDD RING-Ubox_PUB 7 58 IPR045210 -
Pumo4g03712 415 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03712 Pumo-Chr4 76822495 76823742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03712 3 405 U-box Gene Family AT2G35930 42.998 1.07e-108 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03712 - - gmx:100787419 759.214