Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03711 ATGGATGAAATTGAAATCCCTGCCCATTTCCTCTGCCCCATTTCCCTCCAACTCTTGAGGGACCCTGTCACGGTTTGCACAGGAATCACTTATGATAGAGAGAACATTGAGAGATGGTTATTTTCATGCAAAAACAACACATGCCCCGTTACTAAGCAGTGTCTATTGGACCATGATCTCACCCCAAACCACACTCTACGCAGGTTGATCCAAGCTTGGTGCACCCTCAATGCCTCACTTGGAGTTGAACGCATTCCAACTCCAAAGTCACCAGTAGACAGAACTCAGATTGTGAAACTCCTCACTGAGGCAAAGAGGTTCCCGGAGAAGCAACTCAAGTGCCTCACAAGGCTTCGATCCATTGCTTTCGAAGGCCAAAGGAACAAAACATGTTTAGAGTCTGCAGGAGTAATAGAATTCTTGGCCTCAACAATGAAGAAAAACAACACACAAGAAAACTCAACTGTTCTCAGTGAAGCAGCTATTGAAGTCTTGTTCCACCTCAACCTTTCTGAGGCACAGCTTAAAGCGCTCATAAACAACGAGGGGTTTCAGTTTACTGAGTCATTGTTCCATGTGCTGAGGCTTGGAAACTACCAATCTAGAGCCTATGCTACAATGCTACTCAAATCAGCATTTGAGGTAGCTGATCCAATCCAATTGATCAGTGTCAAAACGGTGTTGTTTGTGGAAATCATGCGCGTGCTGCGCGATCAGATTTCGCAACAGGCTTCAAAGGCTGCATTGAAGCTCATTGTGGAGCTGTTTCCATGGGGAAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCGGTCCTCATTGAGCTCCTTCTTGGTTCCTCGGAAAGAAGAACATGTGAACTCATTTTAATAGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGTGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGGTCTCTCATGTGGCAAGTGACAGAGGGGTTAGGATTTTGGCCTCTATTTCTAGGTATTCAGCCAATGCCAGAGTGCTTCATGAGATGTTGCAGCTTGGGGCTGTGTCAAAGTTGTGTTTGGTGCTTCAAGTGAATTGCAGTTTCAAGACTACGGAGAGAGCCAAGGAGATACTCAAATTGCACTCCACAGTTTGGAGGAATTCCCCATGTATTCCTGTACCCTTGTTATCTTCCTATCCATGA 1212 0.4579 MDEIEIPAHFLCPISLQLLRDPVTVCTGITYDRENIERWLFSCKNNTCPVTKQCLLDHDLTPNHTLRRLIQAWCTLNASLGVERIPTPKSPVDRTQIVKLLTEAKRFPEKQLKCLTRLRSIAFEGQRNKTCLESAGVIEFLASTMKKNNTQENSTVLSEAAIEVLFHLNLSEAQLKALINNEGFQFTESLFHVLRLGNYQSRAYATMLLKSAFEVADPIQLISVKTVLFVEIMRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLLGSSERRTCELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASDRGVRILASISRYSANARVLHEMLQLGAVSKLCLVLQVNCSFKTTERAKEILKLHSTVWRNSPCIPVPLLSSYP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03711 403 Gene3D - 94 390 IPR011989 -
Pumo4g03711 403 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Pumo4g03711 403 SUPERFAMILY RING/U-box 3 77 - -
Pumo4g03711 403 CDD RING-Ubox_PUB 7 60 IPR045210 -
Pumo4g03711 403 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Pumo4g03711 403 SUPERFAMILY ARM repeat 97 371 IPR016024 -
Pumo4g03711 403 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Pumo4g03711 403 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
Pumo4g03711 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Pumo4g03711 403 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03711 Pumo-Chr4 76813004 76814553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03711 2 403 U-box Gene Family AT2G35930 55.665 6.52e-163 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03711 - - gmx:100778012 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03711 4 76813004 76814553 Pumo11g01250 11 42068736 42070114 PCT