Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03694 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACGGTTAGATGTGGTCACTGTTCCAATTTGCTAACAGTTAACATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACAGTCAGGTACAGAGACAGCATCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTAGGATCATCATCAAAGTGCAAATCATTTGAGACCGTAGACCATGAGCAACCTAGGATTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGATTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGAGATGGTACTCAAAAGTCTAACGGATTTTACTGA 540 0.4352 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCSNLLTVNMGASLQTFPSQDSQVQRQHLSVQEACSKELGSSSKCKSFETVDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDGTQKSNGFY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03694 179 Pfam YABBY protein 7 156 IPR006780 GO:0007275
Pumo4g03694 179 CDD HMG-box_SF 110 146 - -
Pumo4g03694 179 Gene3D High mobility group box domain 94 152 IPR036910 -
Pumo4g03694 179 FunFam Axial regulator YABBY 101 170 - -
Pumo4g03694 179 SUPERFAMILY HMG-box 101 149 IPR036910 -
Pumo4g03694 179 PANTHER PROTEIN YABBY 6-RELATED 1 166 IPR006780 GO:0007275
Pumo4g03694 179 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03694 Pumo-Chr4 76542471 76552524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03694 1 179 C2C2-YABBY Transcription Factor Family AT1G08465 66.667 6.40e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pumo4g03694 YABBY 2.3e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03694 K25796 - gmx:100785458 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03694 4 76542471 76552524 Pumo11g01240 11 41888926 41896515 PCT