Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03690 ATGGAGGGTGCTGGAATGGAAGAGAATAATATTATTAATGAGAATAATAATAATAATAAGTCTGAGGCGCATTTGACTTCTGCCGCTGCTTTTGTGGAGGGTGGAATTCAGGACGCTTGTGATGATGCTTGCAGTATATGCCTTGAAGCCTTCTGTGATAGTGATCCTTCAACGGTGACGAGTTGCAAGCACGGGTTTCATCTTCAGTGCATTCTGGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAATCTATCAGTCTCAAAGATCCAACAAGGTTTGTAGTTTTCTCTATGTTCTTTACTCTTGTTTATTTTATTCATCCGCTTCTGTCATTATTTGTTTTCAAGATTTACTTGCATGCTTTTTTGTTTTGTATCTGCAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGAAACTTTAGATTCAATCCATCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGCATAATTCAACACTTGGCTGCTGCAGCAGCGATGGGAAGAGCACGCCACATTGCTAGAAGGGAAGGCCAGAGGAACAGGTCATCAGCTCAAGGTCGCCCACATTTTTTGGTTTTTTCAACTCATCCTAATTCACCTCCCATGGGTCCTGCTTCTTCCTCTCCATCTCAGAGGGGGGATGATGAACCAACTCCTACAATTGCTGTTGCCAATCTGTCTCCGACTCCTGCAACTGGAGAAGAATCATCACAGCTGACTTTAGTTCCTCCTGTTCAAGCAGAGCAGGTTTCTGCTTCAGGATCTGGATCTACTGCTCTTGCTACAGATCATCAGGGATCATCTTACAACAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGGCCATCAGAATTCCAGTCATTTTCAGAATCTCTGAAATCTAAACTGAATGCTGTGTCAACAAGATACAAGGAGTCAATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTCTCTCGTAACAACACTATGTCTGATCTTGGATCTGAAGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCGCGCATGATGGAACGCCTGGAGACCAGAGACAATAATAGTAGAAGCAATAGCAATTCTGCTCCAAGTAATTTAGAGGATGGTTCAGTTCAGGGATCTAATGATCAGACTTTAACAGGCACTGAAGGGGACGGTCTTTTGAGAGACAATAATACAAAAGCTTCATGTGCTGCAGGTTCTAGTTCGAATTAA 1314 0.433 MEGAGMEENNIINENNNNNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHGFHLQCILEWCQRSSQCPMCWQSISLKDPTRFVVFSMFFTLVYFIHPLLSLFVFKIYLHAFLFCICSQELLEAVERERNFRFNPSRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMGPASSSPSQRGDDEPTPTIAVANLSPTPATGEESSQLTLVPPVQAEQVSASGSGSTALATDHQGSSYNNRRSPNQSSPSSQDRAGPSEFQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNNTMSDLGSEVRREVNAGIATVSRMMERLETRDNNSRSNSNSAPSNLEDGSVQGSNDQTLTGTEGDGLLRDNNTKASCAAGSSSN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03690 437 Pfam Ring finger domain 43 84 IPR001841 -
Pumo4g03690 437 SMART ring_2 44 84 IPR001841 -
Pumo4g03690 437 MobiDBLite consensus disorder prediction 224 240 - -
Pumo4g03690 437 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 22 94 - -
Pumo4g03690 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 90 IPR013083 -
Pumo4g03690 437 MobiDBLite consensus disorder prediction 196 320 - -
Pumo4g03690 437 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 21 93 - -
Pumo4g03690 437 MobiDBLite consensus disorder prediction 380 437 - -
Pumo4g03690 437 ProSiteProfiles Zinc finger RING-type profile. 44 84 IPR001841 -
Pumo4g03690 437 MobiDBLite consensus disorder prediction 387 437 - -
Pumo4g03690 437 SUPERFAMILY RING/U-box 37 93 - -
Pumo4g03690 437 MobiDBLite consensus disorder prediction 247 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03690 Pumo-Chr4 76502688 76507505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03690 41 92 C3H Transcription Factor Family AT5G15790 42.308 9.85e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03690 K19043 - gmx:100780275 685.256