Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03673 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCCCCACAAGCCAGTAGTCCTCAACTCTTTCCCTGAAGACAACAACAACAACAGTAGCCAACACAAGTGGAAACTTGGTCCAAACATGGATGCCACAGTTAGCAGAAAGAGGTCTCCATCATCCACTCCCAACACTCTCAACACCACCACCACCTCCACCATCCCCTTCCAAGTCAACCTTACCTCTGATGACAAGAGGCCCCACATCGACGAGATGGACTTCTTCCCTAACAAGACCAACAAGGATGATGATGATGATGACAACAACAACAACAACAACAACATAAACAACAACCTTGCCTCTGCCTCCACCTCTGCACCTCCATCACTTGACCACCTTCATCACACACATGATCATTCCTCCACTCCTGCTATCTTAGAATTGAAAGTAAACACTGGTCTGAATCTTCTTACCACCAACACAAGTAGTGATCAATCCATGGTGGACGATGAGATATCGCCTAATTCAGAAGACAAAAGAGCTAAGAGTGAGATGGTTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGGTGGAGAATCATAGGCTGAGGAACATGCTTGATCAGGTTAACACCAATTACAATGCCTTGCAGATGCATTTGGTGAGTTTGATGCAAGAGCAGAAGGGTGAAGAGGAGGGTGAACAACAACAGCGGCAACAAGTGTTTGATGGAAAACTAGAAGAGAAGCAAACTGGGAATGGTGGAGCCTTGGTGCCAAGACAGTTTATGGATCTTGGTTTGGCTACTAATGCTGATACTAATGAACCTTCGCTTTCTTCGTCCGTGGGAAGAAGTCAGGATCGGTCAAAGTCACCAACAAATAATGCAGAGGTTGCATCCAAGGAATTTGGCACTAGGAAGAATGGGAGTACTAGTGATGAAGGACTTGTGTTTGATCAAGACAAGAAGGAATTTGGAAGGGGAATTGAGAGAGAGGACAGTCCCTCGGATCAAGGGGTGTCTGCTAATATTAATGTTCCAAAGTTTAGTCCTCCTAGAAATGTTGATCAAGCTGAGGCCACCATGAGGAAGGCTAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCAATGATCACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCCCGAGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAACAATACTAATCACAACATATGAGGGGAATCACAACCACCCTTTGCCTCCAGCGGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGCTGCTTTCAGGATCAATGTCAAGTGCTGATGGCCTAATGAATGCAAACTTCCTCACAAGGACACTCCTCCCTTGCTCTTCTAGCATGGCAACAATCTCAGCCTCAGCTCCATTCCCAACCGTTACATTGGACTTGACTCAGTCTCCAAACCCATTACAGTTCCCAAAGCCCCCAAGCCAATTCCAAATCCCCTTCCCTGGAGTCCCTCAGAACTTTGCCAATTCCACAGCCTCATTGCTGCCTCAGATATTTGGTCAGGCACTGTATAACCAATCCAAGTTTTCTGGCCTTCAAATGTCCCAAGATGCAGACCCTTCCCAATTGAGTAATCAATCTCAACGGCCACCACCACACCTTGCTGACACGGTTAGTGCTGCCATTGCAGCTGACCCCAACTTCACTGCAGCTTTGGCAGCAGCCATCACTTCCATCATTGGGGGTGCACAGCCAAACAACAATACTACCAGTACTAATAATAATGGCACCACATCGACCAGCACCAGCAATGGCAACATTACATCAAGCAACAACAAATAA 1896 0.4689 MARGGGLSIDSDPIGSFFPHKPVVLNSFPEDNNNNSSQHKWKLGPNMDATVSRKRSPSSTPNTLNTTTTSTIPFQVNLTSDDKRPHIDEMDFFPNKTNKDDDDDDNNNNNNNINNNLASASTSAPPSLDHLHHTHDHSSTPAILELKVNTGLNLLTTNTSSDQSMVDDEISPNSEDKRAKSEMVVLQAELERMKVENHRLRNMLDQVNTNYNALQMHLVSLMQEQKGEEEGEQQQRQQVFDGKLEEKQTGNGGALVPRQFMDLGLATNADTNEPSLSSSVGRSQDRSKSPTNNAEVASKEFGTRKNGSTSDEGLVFDQDKKEFGRGIEREDSPSDQGVSANINVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPSQFQIPFPGVPQNFANSTASLLPQIFGQALYNQSKFSGLQMSQDADPSQLSNQSQRPPPHLADTVSAAIAADPNFTAALAAAITSIIGGAQPNNNTTSTNNNGTTSTSTSNGNITSSNNK 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03673 631 SMART WRKY_cls 376 436 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03673 631 MobiDBLite consensus disorder prediction 314 332 - -
Pumo4g03673 631 MobiDBLite consensus disorder prediction 157 180 - -
Pumo4g03673 631 Coils Coil 176 224 - -
Pumo4g03673 631 MobiDBLite consensus disorder prediction 28 43 - -
Pumo4g03673 631 MobiDBLite consensus disorder prediction 268 313 - -
Pumo4g03673 631 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 154 610 IPR044810 GO:0003700
Pumo4g03673 631 MobiDBLite consensus disorder prediction 108 128 - -
Pumo4g03673 631 MobiDBLite consensus disorder prediction 51 78 - -
Pumo4g03673 631 Gene3D WRKY domain 361 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g03673 631 MobiDBLite consensus disorder prediction 224 255 - -
Pumo4g03673 631 Pfam WRKY DNA -binding domain 378 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03673 631 FunFam probable WRKY transcription factor 31 361 438 - -
Pumo4g03673 631 SUPERFAMILY WRKY DNA-binding domain 369 437 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g03673 631 MobiDBLite consensus disorder prediction 81 106 - -
Pumo4g03673 631 MobiDBLite consensus disorder prediction 224 243 - -
Pumo4g03673 631 MobiDBLite consensus disorder prediction 550 571 - -
Pumo4g03673 631 MobiDBLite consensus disorder prediction 334 348 - -
Pumo4g03673 631 MobiDBLite consensus disorder prediction 599 631 - -
Pumo4g03673 631 MobiDBLite consensus disorder prediction 28 140 - -
Pumo4g03673 631 ProSiteProfiles WRKY domain profile. 371 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03673 631 MobiDBLite consensus disorder prediction 268 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03673 Pumo-Chr4 76277791 76280325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03673 148 600 WRKY Transcription Factor Family AT1G62300 55.794 2.04e-136 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g03673 WRKY 3.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03673 - - gmx:100127384 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03673 4 76277791 76280325 Pumo2g00341 2 5970661 5972138 ECH
Pumo4g03673 4 76277791 76280325 Pumo4g03673 4 76277791 76280325 ECH
Pumo4g03673 4 76277791 76280325 Pumo11g01224 11 41671170 41674202 PCT