Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03671 ATGGAGTGGACAAGAGGCCTCATCATAGGACGTGGCTCATCAGCCACCGTCTACACCGCCGCCTCCTCCCACTCCTCCACTGTCGCGGCCGTCAAGTCGGCAGAGCTAACACTATCAAACTCAGAGCAGCTGCAGACAGAACAGAGGATCCTGTCTTCTCTGTTTTCTCCCCACATAGTTACCTACAAAGGCTGCAACATAACAGAGGAAAACAACACCCTATGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGCACTCTTTCTCAGGAAAGTCGCCGGCACGGTGGCCGGCTCAGCGAACCGGCCATCATGCACTACACGCGACAAGTCCTGAGGGGGCTAGAGTACTTGCACAACAAGGGTGTTGTGCATTGCGATATTAAAGGTAGTAACATTTTGATTGGTGAAGATGGTGCCAAGATTGGGGACTTTGGGTGTGCCAAGTTTGCGAACGAGTCTCCGGCGGCAATGATCGGTGGCACGCCGATGTTCATGGCGCCAGAGGTGGCACGTGGGGAGGAGCAGGGGTACCCTGCTGATGTGTGGGCACTTGGGTGCACTGTGGTTGAAATGGCCACTGGGTTTGCACCATGGCCTAATGTGGAAGACCCTGTCACAGTGTTGTACCGCGTAGCATATTCCGATGATGTTCCTGAGATTCCTTGTTTTCTGTCTGAGGAAGCAAAGGATTTCTTGGGGAAGTGTTTTAGCAGGAACCCTAAGGAGAGGTGGAGTTGTAGTCAGCTTCTGAAGCATACATTTCTTGGGGAATTCAGTTCAAATGAAAAGGAAATTCAGCAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGGGCTTTTGGAATTCTGTGGAAGAGGCAGAGTCAGAGGCAGAGTGTGTCTCTGCCTCAGGCAATGTGGTTCAGATTAAAAGTTTTGAGGATTCTCCCAAGGGTAGGATCAGAAGGCTTGCTTTGTGTTCAGGGGATCCAATTTGGGAAATGGATGATGAAAATTGGATCACAACAAGAGGCAGTGAAGCAGGGGCTTCAAGTTGTGATGGGTTGGATTTGGATGTTAATAGTAGAATTAGTGGTTATTTTTGTGATGATTATTATAAATGTAGGGATGTTAGTGTTGTAGTTGATAGTTTCAATTTTGAGAGAGGCAATTCTGAGATGCTTCTCCCTTCAACGTTGGATTTTTTATAA 1197 0.4795 MEWTRGLIIGRGSSATVYTAASSHSSTVAAVKSAELTLSNSEQLQTEQRILSSLFSPHIVTYKGCNITEENNTLWFNLFMEYMPFGTLSQESRRHGGRLSEPAIMHYTRQVLRGLEYLHNKGVVHCDIKGSNILIGEDGAKIGDFGCAKFANESPAAMIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNVEDPVTVLYRVAYSDDVPEIPCFLSEEAKDFLGKCFSRNPKERWSCSQLLKHTFLGEFSSNEKEIQQSNSCSPTSILEQGFWNSVEEAESEAECVSASGNVVQIKSFEDSPKGRIRRLALCSGDPIWEMDDENWITTRGSEAGASSCDGLDLDVNSRISGYFCDDYYKCRDVSVVVDSFNFERGNSEMLLPSTLDFL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03671 398 Gene3D Transferase(Phosphotransferase) domain 1 2 310 - -
Pumo4g03671 398 Pfam Protein kinase domain 8 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03671 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Pumo4g03671 398 FunFam Mitogen-activated protein kinase kinase kinase 17 2 315 - -
Pumo4g03671 398 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Pumo4g03671 398 SUPERFAMILY Protein kinase-like (PK-like) 6 283 IPR011009 -
Pumo4g03671 398 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 293 - -
Pumo4g03671 398 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03671 398 CDD STKc_MAPKKK 2 256 - -
Pumo4g03671 398 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03671 Pumo-Chr4 76253941 76255234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03671 1 286 MAP Kinase Kinase Kinase AT2G32510 53.425 1.65e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pumo4g03671 Pkinase 1.7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03671 K20716 - gmx:100797801 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03671 4 76253941 76255234 Pumo2g00343 2 5988630 5993930 ECH
Pumo4g03671 4 76253941 76255234 Pumo4g03671 4 76253941 76255234 ECH
Pumo4g03671 4 76253941 76255234 Pumo4g00180 4 2197422 2199071 ECH
Pumo4g03671 4 76253941 76255234 Pumo11g01223 11 41627729 41629012 PCT