Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03669 ATGAGTTACTCCAGGAGATTGAACTCTCTATTGTTAATAGTGTTATTGGTGATATGTGCAAGTGGGGAGGACCCTTATAGGTTCTACACTTGGAATGTCACCTATGGAGACATCTATCCTCTTGGGATTAAACAACAGGGAATATTGATAAACGGGCAGTTTCCAGGGCCACAGGTCGAATCCGTGACCAATGATAACTTGATCTTTAATGTTTTCAATAGCTTGGATGAACCTTTCCTTATCTCTTGGAATGGGGTGCAGCAGAGGAGGAATTCATGGCAGGATGGAGTGTATGGTACTAACTGTCCTATCCCACCAGGGAAGAACTTCACTTATGTTCTTCAAGTGAAGGATCAGATTGGTAGCTACTTCTACTTTCCCTCCCTTGCATTCCACAAGGCAGCAGGGGGTTATGGTGGATTCAAAATTGCAAGCCGCTCAGTGATTCCTGTGCCTTTTCCTCCTCCAGCAGGAGATTTCACCATATTGGCAGGAGACTGGTACAAGAGAAATCACACTGATCTGAGGGCCATTCTAGATGGCGGAAATGACCTTCCTTTCCCTGATGGCCTTATCATCAATGGTCGTGGTTCCAATGCTTACACATTCACGGTTGATCAAGGCAAGACTTACAGATTCCGGATATCAAATGTTGGGCTCACAACTTCTATCAATTTCAGAATCCAAGGGCATAAGATGCTGCTAGTTGAGGTGGAAGGAATCCATACTCTCCAAAACACCTATGATTCCCTTGACATTCATTTGGGGCAGAGTTACTCTGTCTTGGTAACTGCTGATCAACCACCCCAAGACTATTATATTGTGGTCTCAACACGATTCACCTCTCAAGTGTTGACTGCTACCTCCATTCTTCATTACAGTAACTCAGCTAGAAGTGTTTCTGGTCCTCCCCCAGGAGGGCCAACTACTCAAATTGATTGGTCTCTTGAACAAGCTCGGTCTCTCAGGAGGAATCTGACAGCCAGTGGACCAAGGCCTAATCCACAAGGATCCTACCACTATGGTTTGATAAACACAACTCGTACAGTTAGACTTCAAAATTCTGCACCAATTATCAATGGCAAGCAGAGATATGCTGTCAACAGTGTTTCCTTCATCCCTGCTGATACACCACTTAAACTGGCTGATTACTTCAAGATCCCAGGAGTGTTCAACCTTGGAAGCATCCCAGACAACCCCACTGGCAGTGGGGGTTACCTCCAGACTTCTGTCATGGCTGCCGATTTCCGAGGCTACGGGGAGATCGTGTTTGAGAATCCTGAAGACTCTGTCCAGTCATGGCACATTGATGGCCACCACTTCTATGTTGTTGGAATGGATGGTGGCCAATGGTCAGCTGAAAGCAGGTCAAATTACAACTTGAGAGACACAATCTCTCGTTGCACAGTTCAGGTGTATCCCAAGTCATGGACTGCAGTGTACATGCCTTTGGACAATGTAGGAATGTGGAATGTGAGATCAGAGAACTGGGCTAGTCAGTATTTAGGGCAACAATTTTATCTTCGTGTTTATTCTCCAGCCAATTCATGGAGAGATGAGTACCCAATACCAATCTATGATGATCAGTGCCGCAGAGGATCACAAGCCCCTGACGTTGAACTTCTCACAAAACCGAACCTAGGCACAATCCATCTCCTCTTCATAAATAGAGAAGGAGAGAGAGGGGAAAACACTGTTTTCACTGTCGAATTATCTTCGTGTCTCTCGATTCTTCGAAACAGTGCTTCGATCGGAAACCCTAACTTTCACTTACGGGCGTCAATGGAGCTTCGTTCTCGTCGACGCCTTTCCAATCCTTCAGTTTCCGGGAAGGAGCAACAGCCTGGGGATGATGCTGTTGGGGAAGATGAAACTACTGGCATGGGCGGTAACAGTAAATATAGAGTTTCTGTTGGTCTCGTATCTTCAGATTCAGATATAGTTTATGGTTCTGATTCCGATTACGAAGATGAAGAATTTGGTGGGAGCTCCTTACCTGACTTGAATGCAGATCCACTTTCAAACATTAGTGGAGAAGATTATGCTTCCGATTCATCTGATGGTGGCAAGCCTTCATCCAAAAGGGGAAGGGCTCTGCTGTCCAGAGAGAAAAGAAAAAGTTTAAACACAGAATATGGAGAACCGAGTGATGTGTTTAGAAGAGTGGTGGAGTACAAGGATGATGATGATGCTGAATTTGCAATATTTCAGCAACTATCAGTTCCCTCTGTTTCTAAGGGTACTAAGAAGAGGAAATATTCAAGAAAAGGAAGAAAAGGAGATTCAAAGCCAGTGTTGTTGTGGAATGCGTGGGAAGAGGAGCAAGAGAAATGGATTGATCAGCATATATTAGAAGATGTTGACTTAGATAATCAGAGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTTAGATATCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGCGAGTAAAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCAACAAAGTTGTGAACCAGATCAATCCATACCAAGTTCATCCAGCCTGAAGCCTGCAATCAAAGGAACACTTGTCATATGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATCGCTTTACTTTAAAAGGAAGCACCAAGGTGCTGATTTATCATGGGGCTAATAGAGGGAGGAGTGGGGATCGGTTTGCAGATTATGATTTTGTGATAACTACGTACTCTGTTGTTGAGAGTGAGTACAGGAAGCATATGATGCCTCCAAAAGAGAGATGTCCATATTGTGGAAAATTATTTTTGCCGAATAAGTTGATGTATCATCAGAACTATTTTTGTGGACCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAAAAGAAAAAAGAAGTTACCAAAGGGAAGAAGTCAAAGGGTTCTAACAAGAAAAAGGAAGAGGAAACATGGATGAATATAGAAGACTTGGATGCTGTACCTGTCCGTAGCAGTAGCGATAGGTCAATGCTGCATGCTGCGAAATGGCAGCGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTGTAACACTGCTAAAGCAGTTCTTGCTCTAGAGTCTACCTACAAATGGGCGTTAAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCTCTGATACGGTTCCTGCAAATAACTCCTTATTCATATTACTTGTGCAAGGACTGTGACTGCAGGATTCTTGATCATAGCTCTAAAGAATGTTCAGTCTGCACTCACAGTTCTGTGCGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATTCAATCTTATGGAAATGGTGATTCTGGGAAAAGAGCTATGATATTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAGGGATTGCCTGGATATTAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAATTTAATACATATGTTGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGACTGCGTCAGGCCGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTGCAGCATCAAAAAGTGGAGTTATGACAAGTAATGCTACTGTTGAACAAATTTGTGGCATTTGCCATGAGCCAGTAGAAGATGTTGTTGTTACCTCTTGTGAGCATGCATTTTGCAAGGCATGCTTAATAGATTTCTCTGCTTCCTTGGGACGAGTTTCATGCCCCACCTGCTCAAAATTACTTACTGTTGATTTAACATCCAACAAGGATGTTGGGGATCAGGCTAATAAAACAACAATTAAGGGTTTCAGATCCTCAAGCATTTTGAATAGAATTCGTCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTGATAAACTACTCTTTACACAAGTCTGGAGTGTCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTCGGAGATTCACTGAAGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACAGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCTGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGAATTGTCAGGTTTGTCATTGAGAACACAATCGAGGAGAGAATTCTGAAATTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATAGGTGGCTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTATTTGTTACCTAA 4539 0.4276 MSYSRRLNSLLLIVLLVICASGEDPYRFYTWNVTYGDIYPLGIKQQGILINGQFPGPQVESVTNDNLIFNVFNSLDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGFKIASRSVIPVPFPPPAGDFTILAGDWYKRNHTDLRAILDGGNDLPFPDGLIINGRGSNAYTFTVDQGKTYRFRISNVGLTTSINFRIQGHKMLLVEVEGIHTLQNTYDSLDIHLGQSYSVLVTADQPPQDYYIVVSTRFTSQVLTATSILHYSNSARSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTRTVRLQNSAPIINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFNLGSIPDNPTGSGGYLQTSVMAADFRGYGEIVFENPEDSVQSWHIDGHHFYVVGMDGGQWSAESRSNYNLRDTISRCTVQVYPKSWTAVYMPLDNVGMWNVRSENWASQYLGQQFYLRVYSPANSWRDEYPIPIYDDQCRRGSQAPDVELLTKPNLGTIHLLFINREGERGENTVFTVELSSCLSILRNSASIGNPNFHLRASMELRSRRRLSNPSVSGKEQQPGDDAVGEDETTGMGGNSKYRVSVGLVSSDSDIVYGSDSDYEDEEFGGSSLPDLNADPLSNISGEDYASDSSDGGKPSSKRGRALLSREKRKSLNTEYGEPSDVFRRVVEYKDDDDAEFAIFQQLSVPSVSKGTKKRKYSRKGRKGDSKPVLLWNAWEEEQEKWIDQHILEDVDLDNQSEVMNETAEAPSDLTMPLLRYQKEWLAWALKQENSASKGGILADEMGMGKTIQAIALVLAKREFQQSCEPDQSIPSSSSLKPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGANRGRSGDRFADYDFVITTYSVVESEYRKHMMPPKERCPYCGKLFLPNKLMYHQNYFCGPDAVRTEKQSKQAKKKKKEVTKGKKSKGSNKKKEEETWMNIEDLDAVPVRSSSDRSMLHAAKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCTHSSVRHFCWWNKYVATPIQSYGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAASKSGVMTSNATVEQICGICHEPVEDVVVTSCEHAFCKACLIDFSASLGRVSCPTCSKLLTVDLTSNKDVGDQANKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03669 1512 SMART helicmild6 1373 1456 IPR001650 -
Pumo4g03669 1512 SMART ring_2 1258 1297 IPR001841 -
Pumo4g03669 1512 MobiDBLite consensus disorder prediction 600 634 - -
Pumo4g03669 1512 Pfam Helicase conserved C-terminal domain 1342 1456 IPR001650 -
Pumo4g03669 1512 CDD DEXDc_SHPRH-like 810 1160 - -
Pumo4g03669 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1171 1510 IPR027417 -
Pumo4g03669 1512 Gene3D - 342 531 IPR008972 -
Pumo4g03669 1512 Pfam Zinc finger, C3HC4 type (RING finger) 1258 1297 IPR018957 GO:0046872
Pumo4g03669 1512 ProSiteProfiles Zinc finger RING-type profile. 1258 1298 IPR001841 -
Pumo4g03669 1512 Pfam Multicopper oxidase 159 295 IPR001117 -
Pumo4g03669 1512 Gene3D - 968 1177 IPR038718 -
Pumo4g03669 1512 Pfam Multicopper oxidase 33 146 IPR011707 GO:0005507
Pumo4g03669 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 768 1160 IPR027417 -
Pumo4g03669 1512 Gene3D - 812 948 IPR038718 -
Pumo4g03669 1512 Gene3D - 26 147 IPR008972 -
Pumo4g03669 1512 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 671 1510 - -
Pumo4g03669 1512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1338 1502 IPR001650 -
Pumo4g03669 1512 SUPERFAMILY Cupredoxins 23 173 IPR008972 -
Pumo4g03669 1512 SUPERFAMILY Cupredoxins 153 333 IPR008972 -
Pumo4g03669 1512 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 823 1088 IPR014001 -
Pumo4g03669 1512 MobiDBLite consensus disorder prediction 651 711 - -
Pumo4g03669 1512 ProSitePatterns Zinc finger RING-type signature. 1273 1282 IPR017907 -
Pumo4g03669 1512 SUPERFAMILY Cupredoxins 343 516 IPR008972 -
Pumo4g03669 1512 Gene3D - 1182 1510 IPR027417 -
Pumo4g03669 1512 MobiDBLite consensus disorder prediction 696 711 - -
Pumo4g03669 1512 MobiDBLite consensus disorder prediction 978 1005 - -
Pumo4g03669 1512 SMART ultradead3 806 1093 IPR014001 -
Pumo4g03669 1512 FunFam Monocopper oxidase-like protein 157 331 - -
Pumo4g03669 1512 Pfam Multicopper oxidase 380 512 IPR011706 GO:0005507|GO:0016491
Pumo4g03669 1512 CDD CuRO_1_AAO_like_1 28 144 IPR034273 GO:0005507
Pumo4g03669 1512 CDD CuRO_3_AAO_like_1 374 496 IPR034275 GO:0005507
Pumo4g03669 1512 Pfam SNF2-related domain 825 1235 IPR000330 GO:0005524|GO:0140658
Pumo4g03669 1512 SUPERFAMILY RING/U-box 1252 1304 - -
Pumo4g03669 1512 CDD SF2_C_SNF 1340 1467 - -
Pumo4g03669 1512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1253 1321 IPR013083 -
Pumo4g03669 1512 Gene3D - 158 332 IPR008972 -
Pumo4g03669 1512 CDD CuRO_2_AAO_like_1 158 293 IPR034271 -
Pumo4g03669 1512 MobiDBLite consensus disorder prediction 668 689 - -
Pumo4g03669 1512 MobiDBLite consensus disorder prediction 980 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03669 Pumo-Chr4 76231353 76248302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03669 739 1512 RAD5 or RAD16-like Gene Family AT1G05120 67.908 0.0 1092
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo4g03669 SNF2_N 1.3e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03669 K15083 - gmx:100798333 1620.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03669 4 76231353 76248302 Pumo4g03669 4 76231353 76248302 ECH