Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03657 ATGGAGGTGCTGTGGGTCACAAGGCATGGAAGAATGTTTGAGGGGAGGGTGTTGTTGCTCTTGGTTTTGTTCTTGTGGATTCCCACACAGGTGGTGGTGGGAAGGACAAGAACTACCATCACAAACTCTACCACTTCTTCGACACCAAGAGTTTTGAGAGTTGGAGCACTGTTTACTCTTAATTCAATAATTGGAAGATCGGCTAAACCTGCACTTATGGCTGCTTTCGATGATGTTAATGCTGATTCGAGTGTTCTCCCTGGCATTCAATTGGAAGTTATTTTACATGATACAAATTGCAGTGGGTTTATTGGAACAATGGAAGCTTTGCAGTTGATGGAGGATGAAGTGGTTGCTGCCATTGGTCCACAGTCCTCAGGAATAGCCCATGTCATCTCTCATGTTGTCAATGAACTCCATGTCCCTCTTGTTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACCATTATCAGATGTATGCAATTGCAGACTTGGTTGATTACTACAGATGGAGGGAGGTAATAGCCATTTATGTAGATGATGACAATGGAAGGAACGGAATTTCGGTACTCGGAGACGCTCTGGCGAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTCCCTCTTGGAGCCCCCAAGAAAGACATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAATCACGGGTCTTTGTTCTTCATGTTAATCCTGAAACTTTTTTGAGTATCTTTTCTATTGCTGAGAAGCTAGGAATGATGAACAGTGGCTACGTGTGGATTACAACAGATGCGCTTGCTTCAACACTTGATTCATTAGAGCCAGTTGATCCTAACACGATGAATCTCCTACAAGGGGTTTTGGTTTTGCGGCATCACACTCCTGATACTAATGAAAAGAAGAGTTTTCTCTCCAGGATGAAGAGACTAAAAACCAAGGAGACTCCAAGCTTCAATTCCTATGCATTGTATGCATATGATACCGTTTGGTTAGTAGCCCGTGCTCTTGATGCTTTTTTCAAACAAGGTGGTGTGGTATCTTTCTCCTCTGACCCTAAGTTGCGCGACACGAATGGAAGCATGTTGAATTTACAATCACTTCGTGTTTTTGATGATGGCCCTACGTTTCTCCAGACACTTTTGACCACCAACTTCACTGGTCTGACTGGAACAGTTCAGTTTGATACTGAAAGGAATAGATTTCATCCTGCATATGATATCTTGAATATTGGTGGATCTGGAATGAGGAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCAGTTGTGGCTCCAGAAATTTTGTATAAGAAACCACCTAACACTTCAGCAAGCAGCCAGCAACTGTATGGTGTTATATGGCCTGGAGAAACTACAGCTAAACCAAGAGGTTGGGTGTTCCCCAACAATGGAAAGCCACTGAGAATAGCGGTTCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAACCCCCCTGGAGCAAGAGGCTATTGCATTGATGTCTTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCGCGAGAATATATATTATTTGGACCTGGTAATAGAAATCCCAGCTATGATGACCTTGCAAATCAGGTTGCACAAAATCACTATGATGCAGCTGTTGGTGATGTCACAATTGTCCCAAACAGGACAAGGTTTTTGGATTTTACTCAACCTTACATGGAATCAGGGCTGGTTGTTGTTGTTCCTGTCAAAGAGATCAAATCAAGTCCTTGGTCTTTCCTCAAGCCCTTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTATGTTAGTGGGAACCGTTGTATGGATTCTTGAGCATCGGCACAATCCCGAGTTCCGTGGTAGACCAAAGAAACAACTCATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTGAGTGGTCTAGGGAGATTGGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCTAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTGTCATCACAAATTGCAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGAATTCAAGAAGGGTCATTTGCACGCAAGTATTTGACTGAGGAACTCAATATACAACCATCAAGGATAGTCACGTTGAAAAATATGGAGGCATATATTGATGCCCTTGAGCGTGGACCAAAAGATGGAGGGGTTGTGGCCGTTGTTGATGAGCTTCCTTATGTTGAAATCTTAATGTCAAGTACCAACTGTAAGTTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGATTCTCCCCTTGCTGTTGACATGTCAACTGCCATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAGATCCATGACAAATGGCTTTTAAAACATGATTGTGCCGTAGAACAGAGTGATGCTGATTTAAATAAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTTTCCTTGCTTTGATTGCATTCTCCATTAGAGTGCTATGTCAATACACAAAATTCAGCCCAGAACCTGAGCAAGATGATGAGGAAATTTCACCAAATAGGCCAAGGCCTTTCAGAGCCACTACTAGCTTCAGGGACTTGATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAGGCAGAAGAGTAAGAAAAGGAGACGCAGCTTGAGCTCAGATGGCCAATCTAGTTCACCCCCACCTAAGTAA 2838 0.4264 MEVLWVTRHGRMFEGRVLLLLVLFLWIPTQVVVGRTRTTITNSTTSSTPRVLRVGALFTLNSIIGRSAKPALMAAFDDVNADSSVLPGIQLEVILHDTNCSGFIGTMEALQLMEDEVVAAIGPQSSGIAHVISHVVNELHVPLVSFGATDPSLSSLQYPYFVRSTQSDHYQMYAIADLVDYYRWREVIAIYVDDDNGRNGISVLGDALAKKRAKISYKAAFPLGAPKKDISDLLNGVNLMESRVFVLHVNPETFLSIFSIAEKLGMMNSGYVWITTDALASTLDSLEPVDPNTMNLLQGVLVLRHHTPDTNEKKSFLSRMKRLKTKETPSFNSYALYAYDTVWLVARALDAFFKQGGVVSFSSDPKLRDTNGSMLNLQSLRVFDDGPTFLQTLLTTNFTGLTGTVQFDTERNRFHPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSASSQQLYGVIWPGETTAKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGARGYCIDVFEAAINLLPYPVPREYILFGPGNRNPSYDDLANQVAQNHYDAAVGDVTIVPNRTRFLDFTQPYMESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFMLVGTVVWILEHRHNPEFRGRPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIAGIDSLISGTQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVVAVVDELPYVEILMSSTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKHDCAVEQSDADLNKLSLSSFWGLFLICGIACFLALIAFSIRVLCQYTKFSPEPEQDDEEISPNRPRPFRATTSFRDLIYFVDKKEKEIKEILRQKSKKRRRSLSSDGQSSSPPPK 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03657 945 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Pumo4g03657 945 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 65 81 - -
Pumo4g03657 945 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 125 153 - -
Pumo4g03657 945 CDD PBP1_GABAb_receptor_plant 53 444 IPR044440 -
Pumo4g03657 945 FunFam Glutamate receptor 724 832 - -
Pumo4g03657 945 Coils Coil 911 931 - -
Pumo4g03657 945 Gene3D - 724 831 - -
Pumo4g03657 945 SUPERFAMILY Periplasmic binding protein-like I 47 479 IPR028082 -
Pumo4g03657 945 Pfam Ligand-gated ion channel 830 861 IPR001320 GO:0015276|GO:0016020
Pumo4g03657 945 Pfam Receptor family ligand binding region 69 424 IPR001828 -
Pumo4g03657 945 CDD GluR_Plant 485 828 - -
Pumo4g03657 945 SMART GluR_14 488 830 IPR001320 GO:0015276|GO:0016020
Pumo4g03657 945 Pfam Bacterial extracellular solute-binding proteins, family 3 544 829 IPR001638 -
Pumo4g03657 945 Gene3D - 482 597 - -
Pumo4g03657 945 Gene3D - 598 723 - -
Pumo4g03657 945 Gene3D - 167 440 - -
Pumo4g03657 945 MobiDBLite consensus disorder prediction 924 945 - -
Pumo4g03657 945 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 54 894 IPR015683 -
Pumo4g03657 945 FunFam Glutamate receptor 482 598 - -
Pumo4g03657 945 SUPERFAMILY Periplasmic binding protein-like II 463 829 - -
Pumo4g03657 945 Gene3D - 71 415 - -
Pumo4g03657 945 FunFam Glutamate receptor 598 728 - -
Pumo4g03657 945 PIRSF IGluLR_plant 12 943 IPR017103 -
Pumo4g03657 945 FunFam Glutamate receptor 167 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03657 Pumo-Chr4 75854113 75860360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03657 16 795 Ion Channels AT1G05200 65.863 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03657 K05387 - gmx:100799912 1699.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03657 4 75854113 75860360 Pumo4g03657 4 75854113 75860360 ECH
Pumo4g03657 4 75854113 75860360 Pumo11g01199 11 41355328 41361024 PCT