Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03650 ATGGGACAGGTTCCGAGGAGCAACTCTGATATGGGAATGGAAGCTTTAATAAACAGAATGGGATGGAAGTCAAAAGCTATTATCCATGAGGCTGATAAACAAATTGATAAGCTGACTGCGCTACTTCAAAAGCTAAAGGATGCTAATGAGGAATCGAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCACATGGTGTCAAAACAAAAATAGAGGCTATAAACAAAGATAACCTATCCAATAGGCAAAAGCCTGGCTGTGAGAAGGGAACAGGTATTGACAGAGCAAGAATGAATATGACAAATGCCTTGGCTAAAAAATTCAAGGATCTCATGACAGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACAATTGATCGCCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATTCTAGAAGCAGGCCGAGGACAGATGAAAAATGGTGTTTATCTAATCATAGAAAATGTTATCTAG 600 0.395 MGQVPRSNSDMGMEALINRMGWKSKAIIHEADKQIDKLTALLQKLKDANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKTKIEAINKDNLSNRQKPGCEKGTGIDRARMNMTNALAKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDRLIETGNSEQIFQRAILEAGRGQMKNGVYLIIENVI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03650 199 Gene3D - 25 196 - -
Pumo4g03650 199 SMART SynN_4 13 142 IPR006011 GO:0016020
Pumo4g03650 199 CDD SynN 28 178 IPR006011 GO:0016020
Pumo4g03650 199 Coils Coil 28 58 - -
Pumo4g03650 199 SUPERFAMILY t-snare proteins 28 188 IPR010989 GO:0016020|GO:0016192
Pumo4g03650 199 Pfam Syntaxin 29 190 IPR006011 GO:0016020
Pumo4g03650 199 PANTHER SYNTAXIN 31 174 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03650 Pumo-Chr4 75682777 75686301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03650 2 187 SNARE and Associated Proteins AT3G03800 58.065 2.18e-71 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03650 K08486 - gmx:100800991 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03650 4 75682777 75686301 Pumo4g03650 4 75682777 75686301 ECH