Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03649 ATGAACGACCTTCTCACTGATTCATTTGTTGGTGAGGCTAGTAACGGCCAGCCTTCTAGACAAAGTGATATTGAAATGGGACAGGTTCCGAGGAGCAACTCTGATATGGGAATGGAAGCTTTTAATAAACAGATCCATGAGGCTGATAAACAAATTGATAAGCTGTCTGCACTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCACATGGTGTCAAAACAAAAATAGAGGCTATAAACAAAGATAACCTATCCAATAGGCAAAAGCCTGGCTGTGAGAAGGGAACGGGTATTGACAGAGCAAGAATGAATATGACAAATGCCTTGGCTAAAAAATTCAAGGATCTCATGTCAGAGTTCCAGACTCTTAGACAGAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACAATTGATCGCCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATTCTAGAAGCAGGCCGAGGACAGGTAGTAAACACAGTAGAAGAAATTCAGGAGAGACATGATGCTGTAAAAGAAATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTCTAGATAACATTGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAATGCTAAGAAACTCCAGAAGAACTCACGAAAATGGATGTGCATTGCTATCATTATACTGTTGATAATAGTAGCTATCATAGTTGTGGGTGTTCTCAAACCTTGGAAGAGTAGCTAG 921 0.4007 MNDLLTDSFVGEASNGQPSRQSDIEMGQVPRSNSDMGMEAFNKQIHEADKQIDKLSALLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKTKIEAINKDNLSNRQKPGCEKGTGIDRARMNMTNALAKKFKDLMSEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDRLIETGNSEQIFQRAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQNAKKLQKNSRKWMCIAIIILLIIVAIIVVGVLKPWKSS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03649 306 FunFam Syntaxin 132 33 162 - -
Pumo4g03649 306 Gene3D - 33 162 - -
Pumo4g03649 306 PANTHER SYNTAXIN 37 289 IPR045242 -
Pumo4g03649 306 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Pumo4g03649 306 SMART SynN_4 33 159 IPR006011 GO:0016020
Pumo4g03649 306 SMART tSNARE_6 203 270 IPR000727 -
Pumo4g03649 306 Gene3D - 201 301 - -
Pumo4g03649 306 Pfam SNARE domain 244 296 IPR000727 -
Pumo4g03649 306 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Pumo4g03649 306 CDD SynN 38 195 IPR006011 GO:0016020
Pumo4g03649 306 Coils Coil 38 75 - -
Pumo4g03649 306 FunFam Syntaxin 132 201 301 - -
Pumo4g03649 306 CDD SNARE_syntaxin1-like 207 268 - -
Pumo4g03649 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Pumo4g03649 306 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03649 Pumo-Chr4 75651777 75655606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03649 1 303 SNARE and Associated Proteins AT3G03800 63.696 1.91e-128 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03649 K08486 - gmx:100800991 562.762