Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03647 ATGGCTGACTCGGATCGCTCTTCCAGTGGAAGTTCTACACATTCTACTGATTCAGGGAAGCGAGGGTCTTCCAAAGTTGAATTTTCTGAAGATGAGGAAACTCTTATCATCAGGATGTATAAACTGGTTGGGGAGAGGTGGTCTTTAATTGCTGGAAGGATTCCTGGAAGAACAGCAGAGGAAATAGAGAAGTATTGGACTTCGAGATTCTCCAGTTCTGGTGAATGA 228 0.4386 MADSDRSSSGSSTHSTDSGKRGSSKVEFSEDEETLIIRMYKLVGERWSLIAGRIPGRTAEEIEKYWTSRFSSSGE 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03647 75 SMART sant 24 72 IPR001005 -
Pumo4g03647 75 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 74 IPR017930 -
Pumo4g03647 75 Gene3D - 27 70 - -
Pumo4g03647 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 20 71 - -
Pumo4g03647 75 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Pumo4g03647 75 FunFam MYB-like transcription factor 27 69 - -
Pumo4g03647 75 MobiDBLite consensus disorder prediction 1 28 - -
Pumo4g03647 75 CDD SANT 27 66 IPR001005 -
Pumo4g03647 75 Pfam Myb-like DNA-binding domain 25 67 IPR001005 -
Pumo4g03647 75 SUPERFAMILY Homeodomain-like 25 70 IPR009057 -
Pumo4g03647 75 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03647 Pumo-Chr4 75636086 75637621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03647 20 71 MYB Transcription Factor Family AT5G14750 53.846 3.02e-16 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo4g03647 Myb_DNA-binding 8.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03647 - - gmx:100801532 127.872