LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g03645	ATGAGAGTTGTTATTGTCGCAAGAACAAACCAATTTTTCATTGAAGTTGGTACCCAAGAAACAGTTGCAGCAATCAAGAGGAAAATAGAACAAATCCATGGGATTCCAGTGCCTTCACAAATCCTAACAGTTTCTGGGTGGGAACTATTGGATGGATTAGACATGGAAGATTACCCAATAGTGACTGAAGGTACAAAAGTTGACCTCACCATCAAACCAGTGGAGTCACACCCTAACAAAATGCAAATCACAGTAAAATTTTCAGCTAGAAAGTTTAACATTGAGGTGGACAGAACAGACACTGTTCGTAGCTTGAAGGAAAAAATTCACATCATTGATAGCACACCCATCAAAAGAATGACACTGTACTTTTCAGGGACAGAATTGGATGAAGATTTTAGAATCTTAAGTGAGTATGGCATTCGCGAATTTTCTGAAATTGTTGTGTTCCTCAGGCCCTTGAATCGATCAAGAGAAGAACCTCCCACAAGGAAGTTAAGCTTGGTAGTACAAACTTCCTCTAGTTTGCTTAATGCTGCCACCATTCCATTGGAGATGAGAGATGCAAGCACAGTCAGTGACTTGAAGCAGTTACTGATAAGCAGAAAAACTCTGCCAGCTGATGACTATTTGTTCATACACAGGCAGAGGATCATGCGTGATAGCTGTAGCCTCAGGTGGCATGGAGTTGAAAATGGAGACTGTCTCTATGTGTTTAAGGGGACAGTTAGTCGCGGTGGGTATGCATAA	750	0.412	MRVVIVARTNQFFIEVGTQETVAAIKRKIEQIHGIPVPSQILTVSGWELLDGLDMEDYPIVTEGTKVDLTIKPVESHPNKMQITVKFSARKFNIEVDRTDTVRSLKEKIHIIDSTPIKRMTLYFSGTELDEDFRILSEYGIREFSEIVVFLRPLNRSREEPPTRKLSLVVQTSSSLLNAATIPLEMRDASTVSDLKQLLISRKTLPADDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSRGGYA	249

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g03645	249	Gene3D	-	154	244	-	-
	Pumo4g03645	249	PANTHER	UV EXCISION REPAIR PROTEIN RAD23	81	154	-	-
	Pumo4g03645	249	CDD	Ubl_ubiquitin_like	181	239	-	-
	Pumo4g03645	249	Pfam	Ubiquitin family	177	238	IPR000626	GO:0005515
	Pumo4g03645	249	Pfam	Ubiquitin family	83	153	IPR000626	GO:0005515
	Pumo4g03645	249	Pfam	Ubiquitin family	7	72	IPR000626	GO:0005515
	Pumo4g03645	249	SUPERFAMILY	Ubiquitin-like	177	241	IPR029071	-
	Pumo4g03645	249	ProSiteProfiles	Ubiquitin domain profile.	81	152	IPR000626	GO:0005515
	Pumo4g03645	249	SUPERFAMILY	Ubiquitin-like	74	160	IPR029071	-
	Pumo4g03645	249	Gene3D	-	1	69	-	-
	Pumo4g03645	249	SUPERFAMILY	Ubiquitin-like	6	73	IPR029071	-
	Pumo4g03645	249	Gene3D	-	80	152	-	-
	Pumo4g03645	249	ProSiteProfiles	Ubiquitin domain profile.	1	60	IPR000626	GO:0005515
	Pumo4g03645	249	ProSiteProfiles	Ubiquitin domain profile.	166	238	IPR000626	GO:0005515
	Pumo4g03645	249	SMART	ubq_7	166	241	IPR000626	GO:0005515
	Pumo4g03645	249	SMART	ubq_7	81	152	IPR000626	GO:0005515
	Pumo4g03645	249	SMART	ubq_7	1	72	IPR000626	GO:0005515
	Pumo4g03645	249	CDD	Ubl_ubiquitin_like	83	150	-	-
	Pumo4g03645	249	CDD	Ubl_ubiquitin_like	4	69	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g03645	81	152	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	35.616	3.81e-06	43.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g03645	-		-	gmx:100781557	459.144

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo4g03645	4	75625721	75626470	Pumo4g03645	4	75625721	75626470	ECH