Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03640 ATGGATCCTCTATGTGAGTTTTGTGGGGTTGTGAGAGCTGTGGTTTACTGCAAGTCAGATTCTGCTCGTCTCTGCTTGCAATGCGATGGCTGTGTACACTCTGCAAATTCTTTGTCTCGCAGGCACTCGCGTTCCCTCCTCTGCGATAAGTGCAATTCCCAGCCAGCAATGATCCGCTGCATGGATCATAAGTTGTCATTGTGTCAAGGTTGTGACTGGAACCCAAATGACTGTTCTGCATTGGGACATAGGCGCATCGCGTTGAATTGTTACACTGGTTGTCCCTCTTTGGCTGAGTTTTCTAGGATGTGGTCCTTTGTGTTTGATGCTAATTCCTCACTTGGTGGCTGGGAATCGCATGGTACTTTGCCAAAAAGTGAGAGCTGCACTAGCCAGTGTTTGGAGCAACCTGATCATAATGGTGGTTCCTTTGGTTTGGTGAGTGACAAGTTGGATGAAATTGAATCTTGTGTCAGATATGAACCTTGGATGGGGCAATCTCACATCATTCCCTCAAATCCAAATTATGCGCCGTACTGCAAAGACGGAGCATTTTTCTTACCTCAAGACTCAAACCAGCCAGAGGAATGTCCTAATCTAGGAATTCATGATGGGAATGAACTCTGTGAAGGTCTCAATGTGGATAATGTTCAATTAAACTTTGATAGTGCTGATGAAATATTTGGCTGTTCACAAGCTGCCACAAGATACCAACTTGAAGATGGAGGAATGGACTGCCTATTGATGGATAAAAACATATCAGTCACAGAATCCAGTTCACTTATTGAGAGTGCCATGGAGGCATCATCATCTATCCAACAAGATTGTGTGGCTTTTCAATCATCCAGGGCTGGTGGGTCAGCTAGTGTGATGCAGGTCATCAACAGTAATACAAATTGTGCACTTATGAATGCTAGTTGCACTAGAAACATGAGTATGGGATTTCCTCAGGGTCAAGTTCATTCAAACATACCACTTCAGTTTCCCAACATTGTTGGTGAAAATAGTTCTACTGAATATAAAGACTGCGGGTTATCGTCAGTATTTCTGCCAGGTGAATCCCCCTGGGAATCAAATTTGGAGGGTACATGTCCACAAGCAAGGGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACATTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCAAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGACCCTCTTGTGACAAGGGACATCTAA 1275 0.4306 MDPLCEFCGVVRAVVYCKSDSARLCLQCDGCVHSANSLSRRHSRSLLCDKCNSQPAMIRCMDHKLSLCQGCDWNPNDCSALGHRRIALNCYTGCPSLAEFSRMWSFVFDANSSLGGWESHGTLPKSESCTSQCLEQPDHNGGSFGLVSDKLDEIESCVRYEPWMGQSHIIPSNPNYAPYCKDGAFFLPQDSNQPEECPNLGIHDGNELCEGLNVDNVQLNFDSADEIFGCSQAATRYQLEDGGMDCLLMDKNISVTESSSLIESAMEASSSIQQDCVAFQSSRAGGSASVMQVINSNTNCALMNASCTRNMSMGFPQGQVHSNIPLQFPNIVGENSSTEYKDCGLSSVFLPGESPWESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTRDI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03640 424 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 413 - -
Pumo4g03640 424 Pfam CCT motif 368 410 IPR010402 GO:0005515
Pumo4g03640 424 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo4g03640 424 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pumo4g03640 424 ProSiteProfiles CCT domain profile. 368 410 IPR010402 GO:0005515
Pumo4g03640 424 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Pumo4g03640 424 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03640 Pumo-Chr4 75550918 75553526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03640 1 418 C2C2-CO-like Transcription Factor Family AT3G21880 42.891 1.49e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo4g03640 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03640 - - gmx:100804738 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03640 4 75550918 75553526 Pumo4g03640 4 75550918 75553526 ECH