Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03636 ATGTTACATAGTATTATAATATTCTCACGCTATTCACCACTCTCTTGGCCTCAGTTGATACACTCAGTTGATAGATACACACACTTCTTCTCTCTTCTTGCTTGCAACATGGACATGAATTCCTCAGGTGGTGCTTCTAGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTGCTGACTTCATGGCTGCAGACTCTGGTGGTTTCAGTTGGGGGCCTCAGAGTCACAACTTCAAGGGTCCTTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAATCATATGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTGAATGAGAGGTTTCTGGAATTGAGTTCCATCTTGGAGCCTGGTAGGCTGCCCAAAACAGACAAAGTTGCAATATTAAGTGATGCTGCTCGAGTGGTAATCCAATTGAGAAATGAAGCCGAGAGGCTGAAGGAAATGAATGATGAATTACAGGCAAAAATTAAAGAATTGAAGGGTGAGAAGAATGAGCTTAGAGATGAGAAGAATAGGCTGAAGCAAGAGAAAGAAAAGTTGGAGCAGCAGGTAAAACTGGCAAATATACAACCCAGCTTCCTCCCTCAAGCCCCAGCTGCTAAAGGACAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGATACCCTGGAATTGCCATGTGGCAGTTTATGTCCCCTGCTGCAGTTGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 804 0.4366 MLHSIIIFSRYSPLSWPQLIHSVDRYTHFFSLLACNMDMNSSGGASSWLYDYGFDIPVAGADFMAADSGGFSWGPQSHNFKGPSNMSLEMEYSLDSTVMENGPSKRLRTESYASGSKACREKLRRDKLNERFLELSSILEPGRLPKTDKVAILSDAARVVIQLRNEAERLKEMNDELQAKIKELKGEKNELRDEKNRLKQEKEKLEQQVKLANIQPSFLPQAPAAKGQVGSHKLIPFIGYPGIAMWQFMSPAAVDTSKDHLLRPPVA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03636 267 CDD bHLH_AtILR3_like 117 192 - -
Pumo4g03636 267 Gene3D arf6 gtpase in complex with a specific effector, jip4 164 214 - -
Pumo4g03636 267 Gene3D - 104 163 IPR036638 GO:0046983
Pumo4g03636 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 163 IPR011598 GO:0046983
Pumo4g03636 267 SMART finulus 118 169 IPR011598 GO:0046983
Pumo4g03636 267 Coils Coil 153 215 - -
Pumo4g03636 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 179 IPR036638 GO:0046983
Pumo4g03636 267 PANTHER BHLH TRANSCRIPTION FACTOR 39 267 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pumo4g03636 267 Pfam Helix-loop-helix DNA-binding domain 116 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03636 Pumo-Chr4 75430844 75433223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03636 61 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 56.000 7.37e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g03636 HLH 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03636 - - gmx:100806838 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03636 4 75430844 75433223 Pumo4g03636 4 75430844 75433223 ECH