Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03629 ATGCACGTCACGTCCTCACACAGCCACATGAAAGCCGAGCTAAAGGGCACGTCCATTTCCTTTCAAAACCCTAGTACTCTCTTCAACACCCCCCACAGCCCTCTCTCGGGAGCACTCAAAGGGTGTCTCGGAAGCCTCGATGGGGCTTGTATTGAGAAGCTCTTGCTCCACTGCGCCAGTGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTGGGGGACACCAACCAAAGGCTCACCTCGTGGTTTCTGAGGGCTTTAATCTCTAGGGCTTCGAGGATTTGCCCCACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGTTGATGAGCGTGACCGAGCTAGCCGGGTATGTGGATCTAATCCCTTGGCATAGGTTTGGGTATTGTGCATCCAACAATGAAATTTACAAAGCAATAACGGGGTTCCAAAGGGTACATATTCTAGATTTTAGTATAACTCATTGTATGCAATGGCCTACTTTTATAGATGCGTTAGCAAAAAGGCCAGAAGGACCCCCTTCACTTAGAATCACGGTTCCATCTTGTAGACCTCATGTACCCCCCTTGGTCAATATATCAATACATGAAGTTGGGTTACGTTTAGGGAATTTTGCTAAGTTCAGGGATGTCCCTTTTGAATTCAATGTTATAGGAAACACAGGACCTTTAACATCTGTGGAATTGAGCGATGAATCAACTAGTTTTCATTTTGAAGCAATGTTAAGTCTCTTGAATCCTACTATGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTACGCTATTTGTCTGATGATAGAAAGGGAGTTAGCCGCCAAAGTATTTCCCTTAGGGATGCTTTTTTGAATCTAATCAAAGGTCTTAACCCCCGGATTGTGCTCTTGGTTGATGAGGATTGTGATCTTAGTGCATCTAGTCTCACATCAAGAATAACCACATGTTTCAACCATCTGTGGATACCCTTTGATGCATTGGAGACCTTTTTGCCTAAAGATAGTTGTCAGAGGTCAGAGTTCGAATCCGACATAGGCCAGAAGATTGAGAACATCATAAGCTATGAAGGGCACCGGAGAATAGAGAGGTTGGAATCTGGGGTGCAAATGTCCCAAAGAATGAAGAATGTGGGTTACCTCAGTGTTCCATTTTGTGAAGAAACTGTTAGGGAAGTAAAAGGTTTGCTAGATGAGCATGCTAGTGGGTGGGGGATGAAAAGAGAAGAGGGTATGTTAGTTCTCACGTGGAAAGGAAACAGCTGTGTGTTTGCGACAGCTTGGGTCCCTTGTGAAATGATGGATCATATGGGTATGGATGCAAGTCTGTCTTGA 1386 0.4488 MHVTSSHSHMKAELKGTSISFQNPSTLFNTPHSPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIYKAITGFQRVHILDFSITHCMQWPTFIDALAKRPEGPPSLRITVPSCRPHVPPLVNISIHEVGLRLGNFAKFRDVPFEFNVIGNTGPLTSVELSDESTSFHFEAMLSLLNPTMLNLREDEALVINCQNWLRYLSDDRKGVSRQSISLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSCQRSEFESDIGQKIENIISYEGHRRIERLESGVQMSQRMKNVGYLSVPFCEETVREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEMMDHMGMDASLS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03629 461 Pfam GRAS domain family 52 445 IPR005202 -
Pumo4g03629 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 435 IPR005202 -
Pumo4g03629 461 ProSiteProfiles GRAS family profile. 42 446 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03629 Pumo-Chr4 75363087 75365070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03629 27 447 GRAS Transcription Factor Family AT3G49950 44.884 3.61e-120 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo4g03629 GRAS 1.1e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03629 - - gmx:100805056 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03629 4 75363087 75365070 Pumo4g03629 4 75363087 75365070 ECH