Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03620 ATGTTGGCGAAAGCCCATAATAAAGGGGATGGATCCAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAGTATAATGCCCAGCTTGATTCCAGCAGTGATGCGGATAAGCCAGTTCGCAAAGTTCCTGCCAAGGGATCGAAGAAGGGGTGTATGAAAGGTAAAGGGGGCCCTGAGAACTCGCGGTGTAACTACAGAGGTGTGAGGCAAAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCAAACAGAGGCAATAGGCTTTGGCTAGGTACTTTCCCCACTGCCATTGGAGCTGCGCTTGCATATGATGAAGCAGCCAGGGCAATGTATGGTTCGTGTGCCCGTCTCAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCTGAGGAATCTTTCAAAGATTCTCCAGTTGCAAATCACTCTGGTTCCTCAATGGCAGTGTCTGCAAATGAGTCCATGATTTCGCCAAGTAACTCTGGGGTAGGTGCGGAAGAGGATGTTGATATGGAGCGCATTTCCTTATCCCTAAGTGTAAAACATGAGAATGGGGAAGGTGAATCGGGGATAAGTTCGCCCCCTCCTTCTTCCTCATGA 597 0.4891 MLAKAHNKGDGSKSLAKILAKWKEYNAQLDSSSDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESFKDSPVANHSGSSMAVSANESMISPSNSGVGAEEDVDMERISLSLSVKHENGEGESGISSPPPSSS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03620 198 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Pumo4g03620 198 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Pumo4g03620 198 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Pumo4g03620 198 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Pumo4g03620 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 160 - -
Pumo4g03620 198 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Pumo4g03620 198 MobiDBLite consensus disorder prediction 28 59 - -
Pumo4g03620 198 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Pumo4g03620 198 MobiDBLite consensus disorder prediction 132 160 - -
Pumo4g03620 198 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Pumo4g03620 198 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Pumo4g03620 198 MobiDBLite consensus disorder prediction 132 198 - -
Pumo4g03620 198 FunFam Ethylene-responsive transcription factor 2 63 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03620 Pumo-Chr4 75140336 75142142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03620 7 121 AP2-EREBP Transcription Factor Family AT2G40350 63.025 9.29e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g03620 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03620 - - gmx:100527471 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03620 4 75140336 75142142 Pumo11g01163 11 40408138 40410453 PCT