Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03612 ATGAGAACTGATCATCATGTTCTGTTCTTCTTCTCCGTTGTTCTTTCTTTGATGTTATGCTTCCAACTCTGTTCCGCTGGAGATACTTTGAAGGCTGGCCAGAAGATAACAACTCTGGACTCGGCGGGGAACCTTGTTTCATCTAACCGCACATTTGAGCTGGGCTTCTTTTCTTCAAGTGGTAGCAGCAGTGTAAAAAGATACTACTTGGGGATATGGTATCACGAGTTGGACGAACCGGAACCACCAACAGTGGTATGGGTTGCCAATAGAGACGCGCCCGTTGAAGATTCCAGTGCAGTTTTTCAGATCGCACTCAATGGAAATCTGGTAGTAGCAGGTGCATCATCAGAAAATTATTGGTCCTCTGGACTTGAAGCCTCCTTGTCCACAAACAGAACAGTGAAGCTCCTAGATTCAGGGAACCTGGTACTAATGGACGATAACTCCGGAACGAGTTACCTGTGGCAGAGTTTTCAAAACCCAACAGACACGTTTCTTCCTGGCATGAAAATGGATGCAAGTTTAGCGTTGACTTCATGGAGAAACGCCACTGACCCCGCACCTGGGAACTTCTCCTTTAAGCTAGCTCAAGTGGCCGAGAGTCAAAGCTTCGTACTGCAAAAGCAATCACAAATTTACTGGCTACTTGATCGCCTCGACATCGAAGCGATTTCCCCGGTAATATTCAACTTGTTGGACAACGCCACCAGCTGGGTCACTTCATCGAACAATATTTCAAACAAAACGGTCGTTCCATCGCGAGCTTACAGTTACGGGAAATCAAGGCTATTAATGAATTATAGCGGGGAGTTACAATTTCTCAAGTGGGATGAGGAAGACTTACAGTGGGATAAGCAATGGTCGGGGCCAGATGACAAGTGCGACATACATGACTATTGCGGGAGCTTTGGAATCTGTAAAAAAAATAATTGGTTTCCCTGCAAATGTTTGCCAGGATTCCGTTCCAGGCATGATCATTCTGACGACGGTGAATTCCAGCAGCTCCAAGGGTGTGTCAGAAAATCAACATCGTGTATCGACACGGACGTGATGTTCCTCAATTTAACCAAGATAAAAGTGGAAGAGCCAGACCAGAAATTCTTCACAGAAACTGAAGCAGAATGCCAATCCATATGCCTTAGCACTAACAAGTGTCCCGAGTCGCAGTGCCAGGCATATTCATATAATACGTCTACATATGGTGATCGTGGTTCTTTTCCATGCAAAATCTGGACACAAGATTTATCAACTCTCCTAGAGGAGTACGATCGTGGTCTTGATCTTTCTATCCTGGTCAAGAGTTCGGATATAGCACCAACTGCAAAAACGTGTGAACCTTGCGGCACTTACGTGATTCCTTATCCGCTCAGCACTGGGCCAAACTGTGGAGACCCCATGTACAACAACTTCAATTGCACCAAATCCACAAGCGAAGTTAGCTTCATGATACCCGGAGGAATGTCATACCCAGTTACTTGGATAGATGAAGATGCCAGAATGTTTTTCATTCAAACAGATGATTCATATTCGTGTAATTCCAGTTCCACCTATCAAAATGGCACCGATTTTCCATTTAATGTAACTGAGTGCATTGAACATGTTGGAATAAAAATCAATTGGCTACCAGCACCAGAGCCGCTGTGTAGTAAGCTTATAGACTGTAAGAATTGGCCCCATTCGACATGCACAGCAACAAGCGAAGGAGGATCCAGGTGCCATTGTGATTCAAACTATAAGTGGAATCACTCAATCATGAGTTGCATCCAAGAAGAGCCATCAAGAAATCATTCAACCAACCGACTAGCATTGATTCTTACAGTAATACTTACGGGCATGGCTATACTGGCATGCATAATAGCATATGCCATTGTGCGGAGAAAGAAAAAAGCCCTTAAGCTTGATCGGGCAAGCACCCGAATTCAGGAGAGCTTGTACGAGAGCGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATTGAAGGCATTGAAGTGCCTTGTTATACTTTTGCAAGCATTCTAGCAGCAACAGATAATTTCTCAGATTCTAACAAGCTTGGAAGAGGAGGTTATGGGCCTGTCTATAAGGGAACGTTTCCTGGAGGTCAAGATATAGCTGTAAAAAGGCTTGCAAGTGTTTCCACTCAAGGCTTACAGGAATTCAAGAATGAGGTTATCTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTCAGGGGCTACTGCATAAAAGGAGACGAAAAAATCTTAATTTATGAATACATGCCAAACAAGAGTTTGGACTCATTTATATTTGACCGGACACGAACTTTACTTCTGGATTGGGCAATGCGGTTTGAAATAATTGTAGCCATTGCACGTGGCATGCTGTATCTTCACCAAGATTCCAGATTGAGAGTGATTCATAGAGACCTGAAAACCAGCAACATACTTCTAGATGAGGAGATGAATCCAAAGATATCAGACTTTGGCCTTGCCAAAATATTTGGGGGAAAAGAAACTGAAGCAAGTACAGAGAGAATAGTGGGAACCTATGGGTATATGGCTCCAGAGTATGCCTTGGACGGACTTTTTTCAATCAAATCCGATGTTTTCAACTTTGGAGTAGTCCTACTAGAGATTCTTAGTGGAAAAAGGAACACCGGATTCTATCAATCCAAACAAATTTCTAGCCTTTTGGGTTATGCATGGAAGTTATGGACAGAGAATAAGCTACTGGATTTAATGGACCCATCTCTTGGTGAAACATGCAACGAAAATCAATTCATTAAGTGTGCAATTATTGGGCTCTTATGCATACAAGATGAACCTGGTGATCGACCTACTATGTCAAATGTTTTGTCAATGCTCGACATAGAGACAGTATCCATGCCAATTCCCAAGCAACCAACCTTTTTTGTGAATAAGCATCTTTCTAGCTCAACTTCCTCTTCTAGCAAACAAGAAATAAGTCTTCAATTTGAAAGCAGTTATCAAGAAGGACGATAG 3009 0.4277 MRTDHHVLFFFSVVLSLMLCFQLCSAGDTLKAGQKITTLDSAGNLVSSNRTFELGFFSSSGSSSVKRYYLGIWYHELDEPEPPTVVWVANRDAPVEDSSAVFQIALNGNLVVAGASSENYWSSGLEASLSTNRTVKLLDSGNLVLMDDNSGTSYLWQSFQNPTDTFLPGMKMDASLALTSWRNATDPAPGNFSFKLAQVAESQSFVLQKQSQIYWLLDRLDIEAISPVIFNLLDNATSWVTSSNNISNKTVVPSRAYSYGKSRLLMNYSGELQFLKWDEEDLQWDKQWSGPDDKCDIHDYCGSFGICKKNNWFPCKCLPGFRSRHDHSDDGEFQQLQGCVRKSTSCIDTDVMFLNLTKIKVEEPDQKFFTETEAECQSICLSTNKCPESQCQAYSYNTSTYGDRGSFPCKIWTQDLSTLLEEYDRGLDLSILVKSSDIAPTAKTCEPCGTYVIPYPLSTGPNCGDPMYNNFNCTKSTSEVSFMIPGGMSYPVTWIDEDARMFFIQTDDSYSCNSSSTYQNGTDFPFNVTECIEHVGIKINWLPAPEPLCSKLIDCKNWPHSTCTATSEGGSRCHCDSNYKWNHSIMSCIQEEPSRNHSTNRLALILTVILTGMAILACIIAYAIVRRKKKALKLDRASTRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPCYTFASILAATDNFSDSNKLGRGGYGPVYKGTFPGGQDIAVKRLASVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILIYEYMPNKSLDSFIFDRTRTLLLDWAMRFEIIVAIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMNPKISDFGLAKIFGGKETEASTERIVGTYGYMAPEYALDGLFSIKSDVFNFGVVLLEILSGKRNTGFYQSKQISSLLGYAWKLWTENKLLDLMDPSLGETCNENQFIKCAIIGLLCIQDEPGDRPTMSNVLSMLDIETVSMPIPKQPTFFVNKHLSSSTSSSSKQEISLQFESSYQEGR 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03612 1002 Pfam D-mannose binding lectin 84 175 IPR001480 -
Pumo4g03612 1002 Gene3D Phosphorylase Kinase; domain 1 660 761 - -
Pumo4g03612 1002 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 653 761 - -
Pumo4g03612 1002 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 187 IPR036426 -
Pumo4g03612 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Pumo4g03612 1002 SMART blect_4 38 162 IPR001480 -
Pumo4g03612 1002 CDD B_lectin 45 162 IPR001480 -
Pumo4g03612 1002 SUPERFAMILY Protein kinase-like (PK-like) 669 957 IPR011009 -
Pumo4g03612 1002 Gene3D - 22 160 IPR036426 -
Pumo4g03612 1002 CDD STKc_IRAK 692 958 - -
Pumo4g03612 1002 SMART serkin_6 686 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03612 1002 ProSiteProfiles Protein kinase domain profile. 686 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03612 1002 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 122 982 - -
Pumo4g03612 1002 SMART ntp_6 348 433 IPR003609 -
Pumo4g03612 1002 Pfam Protein tyrosine and serine/threonine kinase 689 956 IPR001245 GO:0004672|GO:0006468
Pumo4g03612 1002 ProSiteProfiles PAN/Apple domain profile. 346 436 IPR003609 -
Pumo4g03612 1002 Pfam S-locus glycoprotein domain 254 324 IPR000858 GO:0048544
Pumo4g03612 1002 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 762 965 - -
Pumo4g03612 1002 Gene3D Transferase(Phosphotransferase) domain 1 762 964 - -
Pumo4g03612 1002 ProSiteProfiles Bulb-type lectin domain profile. 30 158 IPR001480 -
Pumo4g03612 1002 FunFam Receptor-like serine/threonine-protein kinase SD1-8 22 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03612 Pumo-Chr4 75049054 75053694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03612 676 974 Receptor kinase-like Gene Family AT4G23140 57.049 2.06e-124 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo4g03612 PK_Tyr_Ser-Thr 5.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03612 - - gmx:100807185 1524.99