Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03611 ATGAGTTGCATCCAAGAAGAGCCATCAAGAAATCATTCAACCAACCGACTAGCATTGATTCTTACAGTAATACTTACAGGCATGGCTATACTGGCATGCATAATAGCATATGCCATTGTTCGGAGAAAGAAAAAAGCCCTTAAGCGTGATCGGGCAAGCACCCGAATTCAGGAGAGCTTGTACGAGAGCGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATTGAAGGCATTGAAGTGCCTTGCTATACTTTTGCAAGCATTCTAGCAGCAACAGATAATTTCTCAGATTCTAACAAGCTTGGAAGAGGAGGTTATGGGCCTGTCTATAAGGGAACGTTTCCTGGAGGTCAAGATATAGCTGTAAAAAGGCTTGCAAGTGTTTCCACTCAAGGCTTACAGGAATTCAAGAATGAGGTTATCTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTTAGGGGCTATTGCATAAAAGGGGATGAAAAAATCTTACTTTATGAATACATGCCAAACAAGAGTTTGGACTCATTTATATTTGACCGGACACGAACTTTACTTCTGGATTGGCCAATGCGGTTTGAAATAATTGTAGGCATTGCACGTGGCATGCTGTATCTTCACCAAGATTCCAGATTGAGAGTGATTCATAGAGACCTGAAAACCAGCAACATACTTCTAGATGAGGAGATGAATCCAAAGATATCAGACTTTGGCCTTGCCAAAATATTTGGGGGAAAAGAAACTGAAGCAAGTACAGAGAGAGTAGTGGGAACCTATGGGTATATGGCTCCAAAGTATGCCTTGAATGGACTTTTTTCAATCAAATCCGATGTTTTAAGCTTTGGAGTAGTCCTACTAGAGATTCTTAGTGGAAAAAGGAACATTGGGTTCTATCAATCCAAACAAATTTCTAGCCTTTTGGGTTATGCGTGGAATTTATGGATGGAGAATAAGCTTCTAGATTTAATGGACCAATCTCTTGGTGAAACATGCAACGAAAATCAATTCGTTAAGTGTGCAGTTATTGGGCTATTATGCATACAAGATGAACCAAGTGATCGACCCACTATGTCAAATGTTTTGTACATGCTTGACATAGAGACAGCAATCATGCCAATTCCCACACAACCAACCTTTTTTGTGAACAAGCGTTTTTCTAGTTCAGCTTCCTCTTCTAGCAAACCAGAAATAAGTTTGCAATTTGAGAGCAGTTATCAAGTAGGTCGATAG 1254 0.3979 MSCIQEEPSRNHSTNRLALILTVILTGMAILACIIAYAIVRRKKKALKRDRASTRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPCYTFASILAATDNFSDSNKLGRGGYGPVYKGTFPGGQDIAVKRLASVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRTRTLLLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMNPKISDFGLAKIFGGKETEASTERVVGTYGYMAPKYALNGLFSIKSDVLSFGVVLLEILSGKRNIGFYQSKQISSLLGYAWNLWMENKLLDLMDQSLGETCNENQFVKCAVIGLLCIQDEPSDRPTMSNVLYMLDIETAIMPIPTQPTFFVNKRFSSSASSSSKPEISLQFESSYQVGR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03611 417 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 401 - -
Pumo4g03611 417 CDD STKc_IRAK 107 373 - -
Pumo4g03611 417 MobiDBLite consensus disorder prediction 395 417 - -
Pumo4g03611 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Pumo4g03611 417 Gene3D Transferase(Phosphotransferase) domain 1 177 379 - -
Pumo4g03611 417 Pfam Protein tyrosine and serine/threonine kinase 104 369 IPR001245 GO:0004672|GO:0006468
Pumo4g03611 417 SUPERFAMILY Protein kinase-like (PK-like) 86 396 IPR011009 -
Pumo4g03611 417 Gene3D Phosphorylase Kinase; domain 1 74 176 - -
Pumo4g03611 417 SMART serkin_6 101 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03611 417 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 68 176 - -
Pumo4g03611 417 ProSiteProfiles Protein kinase domain profile. 101 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03611 417 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 177 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03611 Pumo-Chr4 75033051 75047276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03611 91 412 Receptor kinase-like Gene Family AT4G23140 53.659 1.57e-127 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo4g03611 PK_Tyr_Ser-Thr 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03611 - - gmx:100807185 734.947