Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03607 ATGAAGAACTGCGAGCTGTGCAAGGTTCCGGCTCGGACCTTCTGCGAGTCGGACCAGGCGAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGAGCCAACTTCCTCGTCGAGAGGCACACGCGCACGCTCCTCTGCCACTCGTGCCAGTCACTCACGCCGTGGAAGGCCTCCGGCGCCGCCCTCGGCAACACCGTCTCCCGGTGCGAGAGGTGCGCCGGCGGAACCACCGAACAGGGCCAAGAGAGCCAAGGAGGCAATGACGACGACATAGACACCGACGAAGAGGATGACTACGATGACGATGACGAGAGCGAGGACGAGGTTGCCGCCGACGAAGACGGCGACAACCAGGTTGTCCCTTGGTCCTCCGCACCGCCGCCACCGGCCCCGAGCTCTTCCAGCAGCGAAGAGTCGGTTAGCCGGTGCAACAACGCGGATGAGGTTTCTACCACATTGAAACGACGTCGTGAGGAGGACAATGATTTTCAGGGTTCGAATTCGAGTAATTGGGGATGTGAAGGGAGCGAGGTGGAGAGAGGAGGTTGGTTGGTTCGGTTGCGGCGGCGAGCCGCCGGCGATGTGGCGGTTGAGCGACGGAGTGGTAGAGCGGCGTTTCCGTACGGTTGCAGTGATGATAGAGCATCTGAAGACGTTTGA 660 0.6152 MKNCELCKVPARTFCESDQASLCWDCDAKVHGANFLVERHTRTLLCHSCQSLTPWKASGAALGNTVSRCERCAGGTTEQGQESQGGNDDDIDTDEEDDYDDDDESEDEVAADEDGDNQVVPWSSAPPPPAPSSSSSEESVSRCNNADEVSTTLKRRREEDNDFQGSNSSNWGCEGSEVERGGWLVRLRRRAAGDVAVERRSGRAAFPYGCSDDRASEDV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03607 219 MobiDBLite consensus disorder prediction 75 176 - -
Pumo4g03607 219 MobiDBLite consensus disorder prediction 134 148 - -
Pumo4g03607 219 SMART bboxneu5 1 45 IPR000315 GO:0008270
Pumo4g03607 219 CDD Bbox1_BBX-like 4 45 - -
Pumo4g03607 219 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Pumo4g03607 219 MobiDBLite consensus disorder prediction 149 163 - -
Pumo4g03607 219 MobiDBLite consensus disorder prediction 85 114 - -
Pumo4g03607 219 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Pumo4g03607 219 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03607 Pumo-Chr4 74941999 74943479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03607 2 129 C2C2-CO-like Transcription Factor Family AT5G54470 51.880 3.14e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo4g03607 zf-B_box 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03607 - - gmx:100801024 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03607 4 74941999 74943479 Pumo4g03607 4 74941999 74943479 ECH
Pumo4g03607 4 74941999 74943479 Pumo11g01156 11 40300544 40301764 PCT