Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03598 ATGGTGAAAAACACTCACTCTGATAAAACTGGACTAAGGAAAGGAACATGGACACCAGAGGAAGACAAGAAATTGATTGCTTATATTAGCAGATATGGTCACTGGAATTGGAACCTACTCCCCAAGTTTGCAGGTCTTGAGAGGTGTGGAAAAAGTTGCAGGCTAAGGTGGCTGAATTACTTAAGGCCGAATATCAAAAGAGGGAATTACACTCAAGAAGAAGATGAGACTATTATCAAGCTGCTCCAAAGGCTCGGTAACAGATGGTCTGTGATTGCTGCTCAGCTGCCAGGAAGAACGGACAATGAAATAAAAAACTACTGGCACACCAATCTCAAGAAGCGATATCAACAGACTGCAGACAAATATGTCAAAGCTGAAACTGAAGTTTCCGAATCAAAGGATCAATCTCCAGTTGAAGCACAACCAAAGCCAGACAATGTAGATGTTCCTTTCCAAAGCCAAACTGAAGTTTCCAAAACCCAATTGATCTCTATAACCACCACAGATCGTAGCTCTGCTGATAGCAAAGAAGAGTTTGATATTCCTGAGGATCATGAATTTGCTTTTGCAGATGCATACCAAGTGGAGCCTGTGAACGAAAGCTTGTGGTTGGAACCATATGTGGTTGACATTTCGTCCGTTCCCTGTGATATATTGGTGGCTGAACCCGATTGGTTTAGCCCTGTGTACGACGTAGAACTTTGGAGTCATCACGACAATGAATACTTTGCTTGA 738 0.4241 MVKNTHSDKTGLRKGTWTPEEDKKLIAYISRYGHWNWNLLPKFAGLERCGKSCRLRWLNYLRPNIKRGNYTQEEDETIIKLLQRLGNRWSVIAAQLPGRTDNEIKNYWHTNLKKRYQQTADKYVKAETEVSESKDQSPVEAQPKPDNVDVPFQSQTEVSKTQLISITTTDRSSADSKEEFDIPEDHEFAFADAYQVEPVNESLWLEPYVVDISSVPCDILVAEPDWFSPVYDVELWSHHDNEYFA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03598 245 FunFam MYB-related transcription factor 13 66 - -
Pumo4g03598 245 CDD SANT 69 112 IPR001005 -
Pumo4g03598 245 CDD SANT 16 61 IPR001005 -
Pumo4g03598 245 Gene3D - 14 66 - -
Pumo4g03598 245 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo4g03598 245 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo4g03598 245 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo4g03598 245 MobiDBLite consensus disorder prediction 126 151 - -
Pumo4g03598 245 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 170 - -
Pumo4g03598 245 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo4g03598 245 Gene3D - 68 141 - -
Pumo4g03598 245 SMART sant 13 63 IPR001005 -
Pumo4g03598 245 SMART sant 66 114 IPR001005 -
Pumo4g03598 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo4g03598 245 Coils Coil 109 136 - -
Pumo4g03598 245 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo4g03598 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03598 Pumo-Chr4 74836857 74839371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03598 1 219 MYB Transcription Factor Family AT1G06180 44.395 1.73e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g03598 Myb_DNA-binding 8.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03598 K09422 - gmx:100810385 376.711