Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03597 ATGGTGAGAACCCCTTGTTGTGACAAAAATGGACTCAAGAAAGGTGCGTGGACACCAGAGGAAGACAGAAAGTTGATTGCATATGTCACTAAATATGGCCACTGGAATTGGCGCTTACTCCCCAAGTTTGCAGGGTCAGTTCAGTGGTGTGGGAAGAGTTGCAGGCTGAGATGGCTGAATTATCTAAGGCCAGATGTTAAAAGAGGGAACTTTAGTCATGAAGAAGAAGAAACCATTGTCAGACTTCACGAAAAGCTCGGTAACAGATGGTCAGCAATTGCTGCTCAATTGCCAGGGAGGACGGATAACGAAATAAAGAATCACTGGCACACCGCCCTTAAAAAGCGTTTTGAACAAAAGTCAGATGAAGCGAAACGCGGAACTGGAAAAGAAGCCAATGTTTCCAAGTCAATGGAGAGAGTGTTAGAGAACTGCATTGACTCTGATACCTGTGTTGTGTCTCCACAACCATCATCATATAGCGGATTCTCTTGCATAATAACAACAGATGCTGCTGCTGCAGCCATCACAAACCATGAAAATTCGGATCTAGAAATAGAAGGTGATCATGATGGCCTTTCCTTTTTGGACACATACACGGAGCCTGATGATGTGTGTGCAAATTTCTGGTCAGAGCCTTATTTAATTGACAATTCCTATGTCCCTCCTGAGTGTGAACCTGAATACTTTAGTCCTATGTGCGATGTAGTAGAACTTTGGAGCCACAATGATTTGTACCTGCAGGAATATTGCGAGGGTTAA 762 0.437 MVRTPCCDKNGLKKGAWTPEEDRKLIAYVTKYGHWNWRLLPKFAGSVQWCGKSCRLRWLNYLRPDVKRGNFSHEEEETIVRLHEKLGNRWSAIAAQLPGRTDNEIKNHWHTALKKRFEQKSDEAKRGTGKEANVSKSMERVLENCIDSDTCVVSPQPSSYSGFSCIITTDAAAAAITNHENSDLEIEGDHDGLSFLDTYTEPDDVCANFWSEPYLIDNSYVPPECEPEYFSPMCDVVELWSHNDLYLQEYCEG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03597 253 CDD SANT 70 111 IPR001005 -
Pumo4g03597 253 FunFam MYB-related transcription factor 13 67 - -
Pumo4g03597 253 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 168 - -
Pumo4g03597 253 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo4g03597 253 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pumo4g03597 253 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo4g03597 253 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo4g03597 253 Gene3D - 70 141 - -
Pumo4g03597 253 CDD SANT 16 62 IPR001005 -
Pumo4g03597 253 Gene3D - 13 67 - -
Pumo4g03597 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo4g03597 253 SMART sant 67 115 IPR001005 -
Pumo4g03597 253 SMART sant 13 64 IPR001005 -
Pumo4g03597 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pumo4g03597 253 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03597 Pumo-Chr4 74811439 74814664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03597 1 219 MYB Transcription Factor Family AT2G31180 48.858 6.46e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g03597 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03597 K09422 - gmx:100815765 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03597 4 74811439 74814664 Pumo11g01144 11 40126026 40127394 PCT