Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03596 ATGAGAACCCCTTCTTCCTGTGAAAAAAGTGGACTCAAGAAAGGTGCTTGGACTCCAGAGGAAGATAGAAAGTTAATAGCTTATGTCACTCGTTATGGCTCTTGGAATTGGCGCCAACTCCCAAGATTTGCAGGATTGGCAAGGTGTGGGAAGAGTTGCAGACTCAGGTGGCTGAATTATCTCAGGCCCAACATAAAAAGAGGGAACTATACTAAAGAAGAAGAAGAGATTATAATCAAACTGCACGAAAAGCTTGGTAACAAATGGTCTGTCATAGCCACTCATTTACCCGGAAGAACAGATAACGAAATAAAGAACCACTGGCACACCACTCTCGGAAAGCGTTTTGGAAAGAACGCAGTTCACACCAATAAAAAAGTGAAAGCCACAAAATCAAATACTAGTTCAGGGTCCAAGCAAGACAGGAACTCAATTGAAAACAACGATTTCTTTCACACTAGTTCTCCAACAACATCTAAGACCTCAGACTCTGCCCCTTTGTCCCCGCAGTTCTCGTCCACAACAACCTCGGATTATACCACAGCTGCCACTAACGAAAACTTGTTACTGGAAGACGGGTTCGATTTTATTCTAGATACTGCAGGGAACATGGATTCTTGGGCATTGTCTGAGTCTCCTCTTTCATCATATAACGAAAATTTGGTTGTGGAGAATGATGATTTTGCGCTTCTAGAAGCATTGCAGTCAACAACTGAAAATTTTTGGACAGAGGCGCGCGTGGCTGACATGTCCCTTGTTCCGAACGAATTACTTGCACCTTTGGTGAACGAATCCGAGGAATACTTTTCTTCGATGTATGATGGGGACCTTTGGTGTCAGACCAATTTCCATGATTTACACCTGGACTTATTCCAATGA 879 0.43 MRTPSSCEKSGLKKGAWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTKEEEEIIIKLHEKLGNKWSVIATHLPGRTDNEIKNHWHTTLGKRFGKNAVHTNKKVKATKSNTSSGSKQDRNSIENNDFFHTSSPTTSKTSDSAPLSPQFSSTTTSDYTTAATNENLLLEDGFDFILDTAGNMDSWALSESPLSSYNENLVVENDDFALLEALQSTTENFWTEARVADMSLVPNELLAPLVNESEEYFSSMYDGDLWCQTNFHDLHLDLFQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03596 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo4g03596 292 MobiDBLite consensus disorder prediction 126 177 - -
Pumo4g03596 292 CDD SANT 69 112 IPR001005 -
Pumo4g03596 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo4g03596 292 CDD SANT 16 61 IPR001005 -
Pumo4g03596 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo4g03596 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 214 - -
Pumo4g03596 292 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo4g03596 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo4g03596 292 Gene3D - 69 146 - -
Pumo4g03596 292 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo4g03596 292 FunFam MYB-related transcription factor 13 66 - -
Pumo4g03596 292 SMART sant 66 114 IPR001005 -
Pumo4g03596 292 SMART sant 13 63 IPR001005 -
Pumo4g03596 292 Gene3D - 5 66 - -
Pumo4g03596 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo4g03596 292 MobiDBLite consensus disorder prediction 119 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03596 Pumo-Chr4 74795181 74796695 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03596 2 200 MYB Transcription Factor Family AT2G31180 49.246 1.64e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g03596 Myb_DNA-binding 4.9e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03596 4 74795181 74796695 Pumo11g01143 11 40090925 40092082 PCT
Pumo11g01144 11 40126026 40127394 Pumo4g03596 4 74795181 74796695 PCT