Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03595 ATGGATTTTGACCTTGAAAACCCTCTTGGAAACTTCCACGACCTTCCCTGCGACGCTGTCCCTTCCCTCTTCCTCATCGAACCCGACCACATCCCTCCACCCAATTACTGTCAGAGTCTCAAAGCCAGCGACTTCGACATCTCTGTTAGAAGAGATGTTGTCTCTTTGATCTCACAGTTGTCCTGCACCTTCGATCCAGTTCTCCCTTACTTAGCTATCAACTACTTGGATCGCTTCCTCGCTCACCAAGGAATATTGCAACCAAAGCCATGGGCAAACAAGCTTCTTGCAGTCTCTTGCTTTTCTCTAGCTGCCAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTCCAGGTTCTTATGAATCATGGTGATGGGGGTGCCATTTTTGAGGCACAAACAATTCAAAGAATGGAGGGCATTGTCTTGGGGGCACTCCAGTGGCGAATGCGTTCGATCACCCCTTTCTCTTTCATTCCCTTCTTTGTCAATTTGTTCAGGCTCAAAGACCCGGCATTGAGGCAGGTTCTGAAAGATCGAGCCTCTGAAATCATACTCAAGTCACAAAGAGAGATAAAGGTCTTGGAATTCAAGCCCTCTATAGTTGCTGCCTCTGCCCTTCTGTATGCTTCACATGAGTTGTTTCCTTTTCAATATCCGTGCTTCTTAAGAGCTATATCCGATTGCTCATATGTTAATAAAGAAACTGTGGTGCAATGTTATAATGTGATACAAGACATAGCGAGGGAGGAGTACGAATCAGTGTTGAATATAAATTCAACTTCAGACACGCCGGTTAATGTGTTAGACGAACATTTTCTGAGCTTGGAAAGTGAAAAAACCAACGGAACCAACGTTGTGATACAAGAGCAGGACTTCAAAAGAAGGAAAATCACCGATTATGGCAACAAACGCACGGTCCCGTTTTCACATTTTCATCAATGCTGA 948 0.4462 MDFDLENPLGNFHDLPCDAVPSLFLIEPDHIPPPNYCQSLKASDFDISVRRDVVSLISQLSCTFDPVLPYLAINYLDRFLAHQGILQPKPWANKLLAVSCFSLAAKMLKTEYSATDVQVLMNHGDGGAIFEAQTIQRMEGIVLGALQWRMRSITPFSFIPFFVNLFRLKDPALRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSYVNKETVVQCYNVIQDIAREEYESVLNINSTSDTPVNVLDEHFLSLESEKTNGTNVVIQEQDFKRRKITDYGNKRTVPFSHFHQC 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03595 315 CDD CYCLIN_AtCycD-like_rpt2 153 244 - -
Pumo4g03595 315 SUPERFAMILY Cyclin-like 135 249 IPR036915 -
Pumo4g03595 315 PANTHER CYCLINS 34 254 IPR039361 -
Pumo4g03595 315 FunFam D6-type cyclin 33 148 - -
Pumo4g03595 315 Gene3D - 24 242 - -
Pumo4g03595 315 SUPERFAMILY Cyclin-like 13 150 IPR036915 -
Pumo4g03595 315 Pfam Cyclin, C-terminal domain 153 251 IPR004367 -
Pumo4g03595 315 FunFam D6-type cyclin 149 242 - -
Pumo4g03595 315 SMART Cyclin_C_2 153 268 IPR004367 -
Pumo4g03595 315 SMART cyclin_7 51 144 IPR013763 -
Pumo4g03595 315 SMART cyclin_7 157 246 IPR013763 -
Pumo4g03595 315 Gene3D - 33 151 - -
Pumo4g03595 315 Pfam Cyclin, N-terminal domain 30 150 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03595 Pumo-Chr4 74782102 74784566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03595 1 299 Core Cell Cycle Gene Families AT4G03270 45.687 9.31e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03595 K18812 - gmx:100811659 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03595 4 74782102 74784566 Pumo4g03595 4 74782102 74784566 ECH
Pumo4g03595 4 74782102 74784566 Pumo11g01141 11 40020966 40023431 PCT