Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03590 ATGGGAAGAGCACCTTGTTGTGACAAGAATGGTCTCAAAAAGGGTCCATGGACTCCTGAGGAGGATCTCATGCTCATCAACTACATTCAGACTCATGGACCTGGAAATTGGAGAACCCTCCCCAAGAATGCTGATCTACAAAGATGTGGCAAGAGTTGCCGCCTAAGATGGACTAATTACCTTAGACCCGATATCAAGCGAGGAAGGTTCTCATTTGAAGAAGAAGAGACCATCATTCAGCTCCACAGTGTCTTAGGAAACAAGTGGTCGGCTATAGCAGCTAGGTTGCCAGGGAGAACCGACAATGAAATAAAGAACTATTGGAACACGCATATTAGGAAGAGGTTGCTTCGAATGGGAATTGACCCAGTTACACACGCTCCACGCCTTGATCTTCTTGACATGTCCTCAATTCTCAGGTCAGGAATAGGAGGAACAGTTAACCCATCGATTCTGACTCTGCAGGGCTTATTGGGTGCCCAAGCGTTGATGAACCCAGAGTTTTTGAAGCTCGCTGCCACTGCCACTTTGTTATCTTTGAAGAATGAGAACCCATCAAACTTAGTTTCATCACAAGTACAACAATTCAATAATTCTGGGAATTGTCAAGTACTACAATACCAAATTGCTCCAAATCAGTTTCAGACACCAACTCAAAGCAACAACAACGTGAATAATAATGGCTTATCAAGTTCCCCAGAGAATTCAATTCCTTCCTATCTTGGAGAGAATAATTACCTGAATAATGTTCAACAAAACCAAGGTGATTTGCTACAAGACCCGGAATTGGTGCATTACTTAAACAATATTGCAAACCAAAACATAGGCTATGAATCAGTTCTGTCTACAACCCCATTGAATTCATCATCCACGTATGTGAATAGCAACACGGAGGAAGAGAGGGACACCTATTGCAGTGATGTGTTCAAGTTAGAAATTCCAGAGAGTCTTGACATTAGTGATTTCTTGTAA 972 0.4228 MGRAPCCDKNGLKKGPWTPEEDLMLINYIQTHGPGNWRTLPKNADLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRSGIGGTVNPSILTLQGLLGAQALMNPEFLKLAATATLLSLKNENPSNLVSSQVQQFNNSGNCQVLQYQIAPNQFQTPTQSNNNVNNNGLSSSPENSIPSYLGENNYLNNVQQNQGDLLQDPELVHYLNNIANQNIGYESVLSTTPLNSSSTYVNSNTEEERDTYCSDVFKLEIPESLDISDFL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03590 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo4g03590 323 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo4g03590 323 CDD SANT 69 112 IPR001005 -
Pumo4g03590 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo4g03590 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 268 - -
Pumo4g03590 323 CDD SANT 16 61 IPR001005 -
Pumo4g03590 323 SMART sant 66 114 IPR001005 -
Pumo4g03590 323 SMART sant 13 63 IPR001005 -
Pumo4g03590 323 FunFam Transcription factor MYB39 69 130 - -
Pumo4g03590 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo4g03590 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo4g03590 323 Gene3D - 13 66 - -
Pumo4g03590 323 FunFam MYB-related transcription factor 13 66 - -
Pumo4g03590 323 Gene3D - 69 116 - -
Pumo4g03590 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo4g03590 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo4g03590 323 MobiDBLite consensus disorder prediction 214 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03590 Pumo-Chr4 74710889 74712094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03590 1 323 MYB Transcription Factor Family AT4G21440 47.059 4.95e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g03590 Myb_DNA-binding 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03590 K09422 - gmx:100812189 502.671