Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03559 ATGAAGGATTTGTTAACGACAGGCATGCATATGAGCAGTAATGCCCTTGCCATTGTAACCAAATTGGCTGACACTGTTAACGATTGGAATGTCACAAAATTACTTGGGCGTCGCCTCCTTCAAGATTCTAAGCTTCCCTCATGGGTTGATCAACGTAGACTCCTTAATGCGAATATAAGTCCATTCAAACACAACCCTAATGTTACTGTAGCCATAGATGGTAGTGGAGATTTCAAAAGCATCAATGAGGCATTGAAGCAAGTGCCTGAGAAAAATCGAAAGCCATTTGTGATATACATCAAGGAAGACATTTACCATGAGTATGTTGAAGTTACAAAGGAAATGACCCATGTGGTGTTTATTGGTGATGGTGGAAAAAAGACACGAATAACTGGCAACAAAAACTTCATAGATGGAATTAACACTTATAGAACCGCCACTGTTGCTATTCAAGGAGATCACTTTGTGGCCATCAATATGGGGTTTGAGAACTTCGCTGGACCTCAAAAGCATCAAGCAGTGGCATTAAGAGTCCAAGCAGACAAGTCCATCTTCTACAATTGCTCAATGGATGGATATCAGGACACACTTTATGCACACACCATGCGTCAATTCTATAGGGATTGCACCATTTCAGGTACCATTGACTTCGTGTTTGGTAATGCACTTGCTGTTTTCCAAAATTGCACTTTCGTGGTCCGAAAGCCATTAGAGAACCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAGAGACAACAACCATCTGGAATAATAATCCAAGGGGGATCCATTGTGTCTGACCCTGAGTTTTACTCAGTGAGATTTGAGAACAAGGCTTACCTTGCCCGTCCATGGAAAAATTACTCTAGGACCATAATCATGGACACTTACATTGATGATTTGATTCATGCTGATGGGTATTTGCCTTGGCAAGGACTAGAAGGCCCTTCTGGTATGGATACTTGCTTCTATGCTGAGTACCACAACACTGGCCCTGGTTCAGACAAATCCAAGCGTGTGAATTGGGTTGGGATTTCGAACCTCAATTCAAAAGCTGCAAATTGGTTCTCACCATCCAAGTTCTTTCATGGAACTGACTGGATTGAGGTTACTGGGATTCCTTGCTTCCCTGATGTGCCCACACACCATAGACACAAAAAGACAATACTTAATTGGCAATAG 1185 0.4203 MKDLLTTGMHMSSNALAIVTKLADTVNDWNVTKLLGRRLLQDSKLPSWVDQRRLLNANISPFKHNPNVTVAIDGSGDFKSINEALKQVPEKNRKPFVIYIKEDIYHEYVEVTKEMTHVVFIGDGGKKTRITGNKNFIDGINTYRTATVAIQGDHFVAINMGFENFAGPQKHQAVALRVQADKSIFYNCSMDGYQDTLYAHTMRQFYRDCTISGTIDFVFGNALAVFQNCTFVVRKPLENQQCIVTAQGRKERQQPSGIIIQGGSIVSDPEFYSVRFENKAYLARPWKNYSRTIIMDTYIDDLIHADGYLPWQGLEGPSGMDTCFYAEYHNTGPGSDKSKRVNWVGISNLNSKAANWFSPSKFFHGTDWIEVTGIPCFPDVPTHHRHKKTILNWQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03559 394 Pfam Pectinesterase 67 365 IPR000070 GO:0030599|GO:0042545
Pumo4g03559 394 SUPERFAMILY Pectin lyase-like 65 377 IPR011050 -
Pumo4g03559 394 ProSitePatterns Pectinesterase signature 2. 211 220 IPR033131 -
Pumo4g03559 394 FunFam Pectinesterase 62 380 - -
Pumo4g03559 394 Gene3D - 65 380 IPR012334 -
Pumo4g03559 394 PANTHER PECTINESTERASE 5 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03559 Pumo-Chr4 74210443 74212068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03559 1 375 Carbohydrate Esterase AT3G05610 53.316 1.23e-144 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03559 K01051 - gmx:100803527 748.043