Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03552 ATGGCTGCAGCGAACAGTGGCAAATTCGATGTGGGAGATGAAACTCACAAGACTTCTTCCCAGAAGGGTAGTGAAAGCCAAGATTGGGAGATTGAAAAGGGAAAGGGCGTGGATTCAGGCTCTCAGAGGCGTCAATGGAAGCCAGTTTTTGATGACGCTTCCATCTCACACAATAGGCCTCTCAAGAAAATCCGCAGCCCCGATCGCCAAAACACCCAATCCTCTTCTTCTTCTATTCCTTTTCAACCTTCTCCTCTCTCTACTCCTCCTTCATCCTCTTCAAGAATCGTGTTCCCTTTTGCTTTTGATGGTTCCCAACACCCCATGCAATTCCCTTACCAATTTGGAACCGCAAATTCACCTTTCCCTCACCCATCTAATTTCCAAAACCAGCAACAACAACAGATGATATCATTCGGGTCCCAACAACATAATCTCGCATATCCACCAATCATAGCCCGAGATGCTTCAGTTCTACATCAACATCAACAACAACAACAGCAACATCATCAACATCATCATCATCAGCAGCATCATCAGCAACTTCTTCAGTATTGGAGTGACGCGTTGAATCTAAGTCCAAGAGGAATGTTAGCAAGATTGGGTCCAGATGGAAGGCCATTGTTTCGGCCTCCAACACAGCCCATAAACACAACAAAACTCTACAGGGGAGTGAGGCAACGCCATTGGGGAAAATGGGTGGCCGAAATCCGTCTCCCTCGGAACAGAACGCGTCTCTGGCTAGGCACATTTGACACGGCCGAAGACGCTGCCATGGCCTACGACCGCGAAGCCTTCAAGCTACGAGGAGAAAATGCCAGACTCAATTTCCCCGAACTGTTCCTCAACAAGGACAAAAAAGAACAACAACAACAACAAGAAGAAGACGAAAAACCTTCTTCAGCTATTGCAAAGCAGCATGAACACGAACCTCCTCCCCGTGACGTCCCCAGAGAAGAGTCTAATGAGAATGACTCGGGAATTGGGTCGAGTGACGCCACGGGGAGCGACGAGGTTCATGCTTCTGCTGCTGCTGCTGCAGGTTCTGAAGGAGTTTCACAGGAATTGGTTTGGGGAGAAATGTCTGCATGGTTCAATGCTATTCCTGCTGCTTGGGGTCCTGGTAGTCCCATGTGGGATGATTTGGATGCCACCAATAATCTTCTTTATCAATCACACATTCCTTTTGCAAATCCCAATCAACAAGACCTCAATGATGCTCAGAGACAAGAACATAACACTGAACCAGGTTACTTATGGAAGGATCAGGATTGA 1275 0.4737 MAAANSGKFDVGDETHKTSSQKGSESQDWEIEKGKGVDSGSQRRQWKPVFDDASISHNRPLKKIRSPDRQNTQSSSSSIPFQPSPLSTPPSSSSRIVFPFAFDGSQHPMQFPYQFGTANSPFPHPSNFQNQQQQQMISFGSQQHNLAYPPIIARDASVLHQHQQQQQQHHQHHHHQQHHQQLLQYWSDALNLSPRGMLARLGPDGRPLFRPPTQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKDKKEQQQQQEEDEKPSSAIAKQHEHEPPPRDVPREESNENDSGIGSSDATGSDEVHASAAAAAGSEGVSQELVWGEMSAWFNAIPAAWGPGSPMWDDLDATNNLLYQSHIPFANPNQQDLNDAQRQEHNTEPGYLWKDQD 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03552 424 MobiDBLite consensus disorder prediction 323 337 - -
Pumo4g03552 424 PRINTS Ethylene responsive element binding protein signature 222 233 IPR001471 GO:0003700|GO:0006355
Pumo4g03552 424 PRINTS Ethylene responsive element binding protein signature 244 260 IPR001471 GO:0003700|GO:0006355
Pumo4g03552 424 MobiDBLite consensus disorder prediction 67 92 - -
Pumo4g03552 424 Gene3D AP2/ERF domain 221 279 IPR036955 GO:0003700|GO:0006355
Pumo4g03552 424 MobiDBLite consensus disorder prediction 158 180 - -
Pumo4g03552 424 ProSiteProfiles AP2/ERF domain profile. 221 278 IPR001471 GO:0003700|GO:0006355
Pumo4g03552 424 SUPERFAMILY DNA-binding domain 221 279 IPR016177 GO:0003677
Pumo4g03552 424 CDD AP2 220 280 IPR001471 GO:0003700|GO:0006355
Pumo4g03552 424 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 26 382 - -
Pumo4g03552 424 SMART rav1_2 221 284 IPR001471 GO:0003700|GO:0006355
Pumo4g03552 424 MobiDBLite consensus disorder prediction 398 424 - -
Pumo4g03552 424 MobiDBLite consensus disorder prediction 285 322 - -
Pumo4g03552 424 MobiDBLite consensus disorder prediction 10 40 - -
Pumo4g03552 424 MobiDBLite consensus disorder prediction 1 92 - -
Pumo4g03552 424 MobiDBLite consensus disorder prediction 285 347 - -
Pumo4g03552 424 FunFam Ethylene-responsive transcription factor 2 220 279 - -
Pumo4g03552 424 Pfam AP2 domain 222 270 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03552 Pumo-Chr4 74116366 74118577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03552 27 414 AP2-EREBP Transcription Factor Family AT2G20880 41.327 9.52e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g03552 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03552 - - gmx:100101898 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03552 4 74116366 74118577 Pumo4g03552 4 74116366 74118577 ECH