Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo4g03543 | ATGGCCTTAGACCAGTATTTTGATGAGGCTGTGCCCCAGTTGAACTCCTTCGAAGATAAATCATCTCTCGAAACATGGAAATGTGCCAGTGATGATATTGCAGATTCTGATAGAAATGCCTCTAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCATAGTGCCTCTTCTGAAAATGAAGAAGAGAAGCAACAATGTCCAGTATGCAAATCAGAAATATCACAGTCATCACTTGTTCCACTATACGGCCGCGGCCAAACCACATTACCTTCTAAAGGCAAAGGCCACCAAGTAGGGGATGTCATACCAAGAAGACCCCTTGGCCCTTCACTTGATTCTGCTGCAACTGTTTCCCGACCGATTTCTCACGTTTATCACCGCCATTATCCGAATCACGCTCAACAATTCAACTCAATTCCTGGCGGTTACACTTCAATGTTCAACACAGGTGGTTCACTAGCAAATGCATTTGATACAACATATGGAGTCTTTGGTGAGATGATATATGCAAGGGTCTTCGGAAACCAGATGACTAACTTGTACACATACCCAAATTCATATGATCTTTCAGGGATCAGTAATCCAAGGATCAGAAGGCATCTAATGCAAGTTGATAGGTCACTCAATAGAATCACTTTTTTCCTCCTTTGTTGCGTAGTTTTGTGCCTTCTCTTATTCTGA | 753 | 0.4303 | MALDQYFDEAVPQLNSFEDKSSLETWKCASDDIADSDRNASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHSASSENEEEKQQCPVCKSEISQSSLVPLYGRGQTTLPSKGKGHQVGDVIPRRPLGPSLDSAATVSRPISHVYHRHYPNHAQQFNSIPGGYTSMFNTGGSLANAFDTTYGVFGEMIYARVFGNQMTNLYTYPNSYDLSGISNPRIRRHLMQVDRSLNRITFFLLCCVVLCLLLF | 250 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo4g03543 | 250 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 119 | IPR013083 | - | |
Pumo4g03543 | 250 | CDD | RING-HC_AtRMA-like | 44 | 95 | - | - | |
Pumo4g03543 | 250 | ProSitePatterns | Zinc finger RING-type signature. | 61 | 70 | IPR017907 | - | |
Pumo4g03543 | 250 | SMART | ring_2 | 46 | 93 | IPR001841 | - | |
Pumo4g03543 | 250 | ProSiteProfiles | Zinc finger RING-type profile. | 46 | 94 | IPR001841 | - | |
Pumo4g03543 | 250 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 6 | 247 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Pumo4g03543 | 250 | SUPERFAMILY | RING/U-box | 42 | 106 | - | - | |
Pumo4g03543 | 250 | Pfam | Zinc finger, C3HC4 type (RING finger) | 46 | 93 | IPR018957 | GO:0046872 | |
Pumo4g03543 | 250 | FunFam | E3 ubiquitin-protein ligase RMA1H1 isoform A | 29 | 107 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo4g03543 | Pumo-Chr4 | 74024232 | 74027033 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo4g03543 | 39 | 250 | C3H Transcription Factor Family | AT4G28270 | 37.615 | 1.58e-43 | 144 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo4g03543 | K10666 | - | gmx:100785491 | 457.988 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo4g03543 | 4 | 74024232 | 74027033 | Pumo4g03543 | 4 | 74024232 | 74027033 | ECH |