Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03543 ATGGCCTTAGACCAGTATTTTGATGAGGCTGTGCCCCAGTTGAACTCCTTCGAAGATAAATCATCTCTCGAAACATGGAAATGTGCCAGTGATGATATTGCAGATTCTGATAGAAATGCCTCTAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCATAGTGCCTCTTCTGAAAATGAAGAAGAGAAGCAACAATGTCCAGTATGCAAATCAGAAATATCACAGTCATCACTTGTTCCACTATACGGCCGCGGCCAAACCACATTACCTTCTAAAGGCAAAGGCCACCAAGTAGGGGATGTCATACCAAGAAGACCCCTTGGCCCTTCACTTGATTCTGCTGCAACTGTTTCCCGACCGATTTCTCACGTTTATCACCGCCATTATCCGAATCACGCTCAACAATTCAACTCAATTCCTGGCGGTTACACTTCAATGTTCAACACAGGTGGTTCACTAGCAAATGCATTTGATACAACATATGGAGTCTTTGGTGAGATGATATATGCAAGGGTCTTCGGAAACCAGATGACTAACTTGTACACATACCCAAATTCATATGATCTTTCAGGGATCAGTAATCCAAGGATCAGAAGGCATCTAATGCAAGTTGATAGGTCACTCAATAGAATCACTTTTTTCCTCCTTTGTTGCGTAGTTTTGTGCCTTCTCTTATTCTGA 753 0.4303 MALDQYFDEAVPQLNSFEDKSSLETWKCASDDIADSDRNASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHSASSENEEEKQQCPVCKSEISQSSLVPLYGRGQTTLPSKGKGHQVGDVIPRRPLGPSLDSAATVSRPISHVYHRHYPNHAQQFNSIPGGYTSMFNTGGSLANAFDTTYGVFGEMIYARVFGNQMTNLYTYPNSYDLSGISNPRIRRHLMQVDRSLNRITFFLLCCVVLCLLLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03543 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 119 IPR013083 -
Pumo4g03543 250 CDD RING-HC_AtRMA-like 44 95 - -
Pumo4g03543 250 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Pumo4g03543 250 SMART ring_2 46 93 IPR001841 -
Pumo4g03543 250 ProSiteProfiles Zinc finger RING-type profile. 46 94 IPR001841 -
Pumo4g03543 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo4g03543 250 SUPERFAMILY RING/U-box 42 106 - -
Pumo4g03543 250 Pfam Zinc finger, C3HC4 type (RING finger) 46 93 IPR018957 GO:0046872
Pumo4g03543 250 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 29 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03543 Pumo-Chr4 74024232 74027033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03543 39 250 C3H Transcription Factor Family AT4G28270 37.615 1.58e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03543 K10666 - gmx:100785491 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03543 4 74024232 74027033 Pumo4g03543 4 74024232 74027033 ECH