Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03520 ATGGATAGCTATGAGGTGATAGTGTGGTTCTCTCTCTTATTCTCCCTCATACCCAGCATCACTACACTGAGTAGTATCACTCCAGATCAACCCTTACATCACAATGAAACCCTGGTTTCACCATCTGGAACCTTTGAAGCAGGATTCTTCAGCCCTGGAAGTTCTGAGAGACAATACTTTTGCATATGTTACAAGAATATATCACCTAGAACAATTGTGTGGGTGGCCAACAGAAACACCCCATTAGATAACTCCACAGGAGTTTTCAAAGTCAGTGATGGGGGGAATCTTGTTGTACTTGATGGCATTGGTGCAAGTGTTTGGTCTTCCAATGCATCAAACACTGCTCAGAAGCCTATTGTGCAGCTCTTGGACTCTGGCAACCTTGTTGTGAAAGATGGTGGAACAAATGCCCCAGAGAAGGTTGTGTGGCAAAGCTTTGATTATCCTGGTGACACTTTGCTTCCTGGAATGAAACTCAAAAGCAGTCTTGTGACAGGTGCACATAGTTGTCTTACATCATGGAGGGACACAGAAGATCCTTCTCTGGGGGAATATTCATTGTATATTGATCCTCATGGTTTTCCTCAGAGAGTGACTACAAAGGGAGGGACTTGGTTGTATAGAGCTGGCTCATGGAATGGTTATCAATTTTCAGGTGTTCCTTGGCAGCTGTTGCATAATTTCTTCAATTACTATTTTGTGTTGACCCCAAAGGAAGTGTATTATGAGTATGAACTCTTGGAACCTTCGGTTGTTACAAGGTTTGTGATCAACCAAGAAGGGCTTGATCAACGTTTCACATGGTCAGACAGGACAAAGAGTTGGGAGCTTTTTGCCTCTGGCCCCAGGGACCAGTGTGAAAACTATGCCTTGTGTGGTGCAAATTCTGTTTGCAAAATTAATAGCTACCCCATATGTGAATGCTTGGAGGGCTTTCTCCCAAAATTCAAGGAAAAATGGAGATCATTGGATTGGTCTGATGGGTGTGTTCGGCAAACGAATCTTAGCTGTGACAATGGAGATGGGTTTATTAAGTATGAAGGAATGAGATTGCCCGACACGTCTTCCTCCTGGTTTGACACAAGCATGAGCCTTGATGAATGTGAGAGTGTGTGTTTGAAAAATTGCTCTTGCACAGCATACACAAGTTTAGATATCAGAGATGGTGGGAGGGGCTGCTTGCTTTGGTTTGGTAACATTGTGGATATGGGAAAACATGTCTCCCAAGGACAAGACATTTACATACGAGTGGCTGCTTCCGAGCTAGACGATACTTGGCATAAAAGGCACATTAGCACGAAGCTTGTGGTGATTTTGGCAACAATCACTACGTTCATCATAGGCTTAATATTAGGATCAGTCATATACATACGGAGAAAACTAGAGAAACCAGGAAAGACAAATACAATCGACCAGATGCATCACACTATAAAACAAGAGAAGAAAGACATTGACTTACCAACTCTTGATTTATCAACCATTGATAATGCCACTAGTAACTTCTCTGCTAGTAACATATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTGTGCTGGCAAATGGACAAGAGATCGCTGTTAAGAGGCTTTCCAAAAATTCTGGACAAGGATTAGATGAGTTCAGAAATGAAGTTGTGTTAATTGCCAATCTTCAGCACCGGAATCTTGTAAAGATTCTTGGGTGTTGTATTCAAGATGATGAGAGAATATTGATCTATGAATTCATGCCTAACAGGAGCTTGGATCTTTTCATTTTTGATCGAACAAGAAAGAAATTATTGGATTGGAACAAACGCTTCCAAATTATAAGTGGCATTGCTAGAGGGCTTCTCTATCTTCATCATGATTCTAGACTAAGGATCATTCACAGAGATATCAAAACAAGCAATATTCTTCTTGATAATGATATGAATCCAAAGATATCAGACTTTGGACTAGCAAGGATGCTTGTTGGCGATCACACTAAAGCCAATACAAAAAGAGTAGTGGGAACTCATGGTTACATGCCTCCTGAGTATGCAGTGTATGGATCATTTTCAGTGAAATCAGATGTCTTTAGCTTTGGTGTTATTGTACTAGAGATAGTTAGTGGGAGGAAGAACACAAAGTTTCTTGATCCACTCAATCAACTTAACCTTATTGGGCATGCATGGAGATTGTGGAGTGAAGGGAGGCCTTTGGAGCTAATTGATGAATCACTAGAGGATTCAATCATTGAAAGTGAAGTATTGAAAATTGTTCACGTGGGGCTCTTATGCGTTCAAGAGAGACCAGAGGACAGGCCCAACATGTCAAGTGTGGTTTTAATGCTGAATGGTGAGAGACCATTGCCCAGGCCCAAGCTGCCAGCGTTTTATCCACACCATGAAGATTATTCTTCATCCAGCAAGTGTGAATTCAGCTCAAATGAATTGTCCATCACGTTAGAGGCAAGATAG 2445 0.416 MDSYEVIVWFSLLFSLIPSITTLSSITPDQPLHHNETLVSPSGTFEAGFFSPGSSERQYFCICYKNISPRTIVWVANRNTPLDNSTGVFKVSDGGNLVVLDGIGASVWSSNASNTAQKPIVQLLDSGNLVVKDGGTNAPEKVVWQSFDYPGDTLLPGMKLKSSLVTGAHSCLTSWRDTEDPSLGEYSLYIDPHGFPQRVTTKGGTWLYRAGSWNGYQFSGVPWQLLHNFFNYYFVLTPKEVYYEYELLEPSVVTRFVINQEGLDQRFTWSDRTKSWELFASGPRDQCENYALCGANSVCKINSYPICECLEGFLPKFKEKWRSLDWSDGCVRQTNLSCDNGDGFIKYEGMRLPDTSSSWFDTSMSLDECESVCLKNCSCTAYTSLDIRDGGRGCLLWFGNIVDMGKHVSQGQDIYIRVAASELDDTWHKRHISTKLVVILATITTFIIGLILGSVIYIRRKLEKPGKTNTIDQMHHTIKQEKKDIDLPTLDLSTIDNATSNFSASNILGEGGFGPVYKGVLANGQEIAVKRLSKNSGQGLDEFRNEVVLIANLQHRNLVKILGCCIQDDERILIYEFMPNRSLDLFIFDRTRKKLLDWNKRFQIISGIARGLLYLHHDSRLRIIHRDIKTSNILLDNDMNPKISDFGLARMLVGDHTKANTKRVVGTHGYMPPEYAVYGSFSVKSDVFSFGVIVLEIVSGRKNTKFLDPLNQLNLIGHAWRLWSEGRPLELIDESLEDSIIESEVLKIVHVGLLCVQERPEDRPNMSSVVLMLNGERPLPRPKLPAFYPHHEDYSSSSKCEFSSNELSITLEAR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03520 814 CDD B_lectin 29 150 IPR001480 -
Pumo4g03520 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 780 - -
Pumo4g03520 814 CDD PAN_AP_plant 334 419 - -
Pumo4g03520 814 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Pumo4g03520 814 SMART serkin_6 502 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03520 814 ProSiteProfiles Protein kinase domain profile. 502 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03520 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 760 - -
Pumo4g03520 814 Pfam PAN-like domain 338 404 IPR003609 -
Pumo4g03520 814 PIRSF SRK 2 813 IPR024171 GO:0004674
Pumo4g03520 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 337 418 - -
Pumo4g03520 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 577 - -
Pumo4g03520 814 SUPERFAMILY Hairpin loop containing domain-like 342 410 - -
Pumo4g03520 814 Pfam D-mannose binding lectin 71 176 IPR001480 -
Pumo4g03520 814 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Pumo4g03520 814 Gene3D Hepatocyte Growth Factor 334 416 - -
Pumo4g03520 814 ProSiteProfiles PAN/Apple domain profile. 338 419 IPR003609 -
Pumo4g03520 814 SMART blect_4 29 150 IPR001480 -
Pumo4g03520 814 SUPERFAMILY Protein kinase-like (PK-like) 489 793 IPR011009 -
Pumo4g03520 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Pumo4g03520 814 Pfam Protein tyrosine and serine/threonine kinase 505 771 IPR001245 GO:0004672|GO:0006468
Pumo4g03520 814 Gene3D Transferase(Phosphotransferase) domain 1 578 778 - -
Pumo4g03520 814 CDD STKc_IRAK 508 775 - -
Pumo4g03520 814 SMART ntp_6 339 418 IPR003609 -
Pumo4g03520 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 147 - -
Pumo4g03520 814 Gene3D Phosphorylase Kinase; domain 1 464 577 - -
Pumo4g03520 814 Gene3D - 20 147 IPR036426 -
Pumo4g03520 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 181 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03520 Pumo-Chr4 73568861 73572812 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03520 430 790 Receptor kinase-like Gene Family AT4G23190 51.499 5.70e-124 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo4g03520 PK_Tyr_Ser-Thr 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03520 - - gmx:106794307 1531.15