Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03516 ATGCAAAACAAGAGAACACAATGGTTTTGTTTTTGGGTTTTTCTGTTTTTCTCTTGTATATCAAGAACTACCTCCACTTCACTAGACAGTATTACTCCAACTCGATCCGTCATTGATGGAAAGACATCATTAATTTCACCTGCAAAAACCTTTGAACTTGGATTCTTCAGCCCTGGAAGCTCAAAGAGCCGATACTTGGGTATTTGGTACTACAGCATAACTCCTGTAACAGTGGTTTGGGTTGCCAACAGAGAAGCACCACTCAACACTACCTCAGGAGTTCTAAAACTCAGTGATCAAGGTCTTCTTGTTCTTGTCAATGGCACAAACAACACATTGTGGTCCTCCAACATGTCAACCACAGCAGAGAATCCAATTGCACAGCTATTAGACTCAGGAAACTTTGTTGTGAAAGATGGAAATAGTGAGCATGAGCACTATCTTTGGCAGAGTTTTGATCATCCATGTGATACATTATTGCCTGGAATGAAGCTCGGTTATCTAGAAAAGGGAGAGGAATGGTTTCTATCATCGTGGAAAAATGCTGATGATCCTGCTCATGGAGATTATTCTTTCAAAATAGACCGCGGAGGATTTCCACAAGCAGTTATGTTGAAGGGAACCAAAATAAGGACTATATTGTCAGAGTATTTAATTCATTCGCAGAGTGCAGACGTTATAATTGAGTCCGTTTGGAATAAAAAAGAGAGATATTATCAGTTCAAGGCCCTAAATAAATCTCTTCCCTACAGATTTTGGGTGAGCCCTAGTGGGACTGCATTGTTTTCCCGTTTGGAAAGTCCAACCTGCGACTGGAAGATTCTATATGCTCAACCATCATTCCCATGTGAATATTATGGGACGTGTGGTGCAAATAGCATTTGCAATACCATGAGACAAGCAAGGTGTACATGTCTGGATGGATTTGTTGGAAACATGAATCGGTCCAAGGATTGTAGTCGAACCATTGATTCGAGTTGTAACGAAGACGCGTTCAGGAAGTACACAGGTATGGTTCTTCCCGACACATCCTCATCCAGGTATGAAAATGACATGGTCCGAGAGAAATGTAAGGATTTATGTCAGGTAAATTGTTCCTGCACAGCATATGCAAATTTGGTTATACCTGATAGAGGAAGTGGCTGCTTGCTTTGGTTTCACGATTTGAATGACTTGAGGCATTACCCAGAAGCTCATGGGGGCCAAGACATTTATGTACGATACCCTGTTTCAGAGCTTGGTACACCCAATTCACCAAAAAAAGAAAATGATCCTGGTACACACTCTATCAGAGCTCACAATCAGAAAAATGGATTGAACAAGAGGAAGATTGAAGCCATCACTGGCTCTATCCTGTTCGCCATGTGCATGATAATTGGATTGGCCACATGGTTATGGAAAAAGAAAGTCGAAATGGAAGGGATGAAAAAAATATTTCACCAAAGTCATCACAACTCTAAACTAAGGAAGGAAGAGTCGGATTTACCAGCATTTGACTTGCCTGTCATTGCTAAAGCCACTGATAACTTCTCGGACACTAACAAACTGGGACAAGGTGGTTTTGGACCAGTGTACAAGGGTACTCTAATAGATGGGCAAGACATAGCAGTGAAACGACTTTCAAACAACTCTGGTCAGGGTTTGACAGAATTTAAAAATGAAGTTGCCTTGATTGCAAAACTTCAACATCGTAATCTTGTGAAGCTTCATGGTTATTGCATTCAAGAGGAAGAGAAAATGTTGATATATGAATACATGCCCAACAAGAGCTTGGACTACTTTATTTTTGATGAAATTAGGAGCAAATTATTGGATTGGAGTAAGCGTTTCCATATTATTGGTGGCATTGCTCGAGGGCTAGTGTATCTTCATCAAGACTCTAGATTGAGGATTATTCACCGAGATTTGAAAACCAGCAACATTCTACTAGATGAAAATATGAATCCCAAAATATCAGACTTTGGCCTTGCTCGCACATTATGGGGAGATCAAGTAGATGCTAACACTAACAAGGTTGCCGGGACATATGGATACATGCCTCCTGAATATGCTGTACATGGACATTTCTCAACGAAATCCGATGTCTTTAGTTTTGGTGTCATCATTTTAGAAATAGTAAGTGGGAAGAAAAACAGAGATTTTTCTGATTCAGAACACTTTCTTAATCTTCTTGGACATGCATGGAGACTATGGACTGAAGGAAGGCCAACAAACCTGATGGATGCATTTTTAGGTGAAAGATGCACTTTATCTGAAGTTATTCGATGTATACATGTAGGTTTGTTATGTGTGCAACAAAGACCAGAAGATAGGCCTGATATGTCAGCTGTGATTCTGATGCTGAATGGTGAAAAATTGTTGCCACAGCCAAAGGCACCTGGTTTTTACAATGTGTAG 2397 0.4026 MQNKRTQWFCFWVFLFFSCISRTTSTSLDSITPTRSVIDGKTSLISPAKTFELGFFSPGSSKSRYLGIWYYSITPVTVVWVANREAPLNTTSGVLKLSDQGLLVLVNGTNNTLWSSNMSTTAENPIAQLLDSGNFVVKDGNSEHEHYLWQSFDHPCDTLLPGMKLGYLEKGEEWFLSSWKNADDPAHGDYSFKIDRGGFPQAVMLKGTKIRTILSEYLIHSQSADVIIESVWNKKERYYQFKALNKSLPYRFWVSPSGTALFSRLESPTCDWKILYAQPSFPCEYYGTCGANSICNTMRQARCTCLDGFVGNMNRSKDCSRTIDSSCNEDAFRKYTGMVLPDTSSSRYENDMVREKCKDLCQVNCSCTAYANLVIPDRGSGCLLWFHDLNDLRHYPEAHGGQDIYVRYPVSELGTPNSPKKENDPGTHSIRAHNQKNGLNKRKIEAITGSILFAMCMIIGLATWLWKKKVEMEGMKKIFHQSHHNSKLRKEESDLPAFDLPVIAKATDNFSDTNKLGQGGFGPVYKGTLIDGQDIAVKRLSNNSGQGLTEFKNEVALIAKLQHRNLVKLHGYCIQEEEKMLIYEYMPNKSLDYFIFDEIRSKLLDWSKRFHIIGGIARGLVYLHQDSRLRIIHRDLKTSNILLDENMNPKISDFGLARTLWGDQVDANTNKVAGTYGYMPPEYAVHGHFSTKSDVFSFGVIILEIVSGKKNRDFSDSEHFLNLLGHAWRLWTEGRPTNLMDAFLGERCTLSEVIRCIHVGLLCVQQRPEDRPDMSAVILMLNGEKLLPQPKAPGFYNV 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03516 798 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Pumo4g03516 798 CDD STKc_IRAK 516 783 - -
Pumo4g03516 798 CDD PAN_AP_plant 324 409 - -
Pumo4g03516 798 Pfam D-mannose binding lectin 77 180 IPR001480 -
Pumo4g03516 798 Gene3D - 24 152 IPR036426 -
Pumo4g03516 798 MobiDBLite consensus disorder prediction 414 433 - -
Pumo4g03516 798 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 185 IPR036426 -
Pumo4g03516 798 Gene3D Phosphorylase Kinase; domain 1 470 585 - -
Pumo4g03516 798 PIRSF SRK 2 798 IPR024171 GO:0004674
Pumo4g03516 798 SUPERFAMILY Protein kinase-like (PK-like) 492 781 IPR011009 -
Pumo4g03516 798 Pfam PAN-like domain 327 392 IPR003609 -
Pumo4g03516 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 585 - -
Pumo4g03516 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 152 - -
Pumo4g03516 798 SMART blect_4 35 155 IPR001480 -
Pumo4g03516 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Pumo4g03516 798 Pfam Protein tyrosine and serine/threonine kinase 513 730 IPR001245 GO:0004672|GO:0006468
Pumo4g03516 798 ProSiteProfiles Protein kinase domain profile. 510 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03516 798 Gene3D Transferase(Phosphotransferase) domain 1 586 787 - -
Pumo4g03516 798 Pfam S-locus glycoprotein domain 232 311 IPR000858 GO:0048544
Pumo4g03516 798 SMART serkin_6 510 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03516 798 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 768 - -
Pumo4g03516 798 CDD B_lectin 43 155 IPR001480 -
Pumo4g03516 798 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Pumo4g03516 798 SMART ntp_6 327 408 IPR003609 -
Pumo4g03516 798 ProSiteProfiles PAN/Apple domain profile. 327 409 IPR003609 -
Pumo4g03516 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03516 Pumo-Chr4 73550546 73554886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03516 498 795 Receptor kinase-like Gene Family AT4G23230 58.863 3.19e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo4g03516 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03516 - - gsj:114373347 1251.5