Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03508 ATGGAAACCTCTGGGGTAACCGAAGACCAAAGACGTGCCTTGGTGCTGTATCTTAATTCCCAACAAATATGTTGCTTTGAACTTGCCATTTTTTTAGATCCCAGAGATTCCCAACAACCTATGATAACTTTCGTTGAAATTGTTGAATTCCTCAACTCCGCGCTCTCACTCTCCCCCTCCAATCGCGCTGCCGTCAAGAGGGCCTTCCTAACCATCATGGATTACGCCAAAATTGGTACCGCTTTCGTCGTTGTTTTTGTGTTTCCCGCTCTTACTGAATTTTTTCTTTTCATCATCGCAGGTGGTGGTACCTGGATTGATACTATGGTGACCTATGGTGTTGTCCCTGCTCTTGTTAAGCATCTTCGGGCGCCGGAGTCCTCTAAAGTTGACAGTGACGTCTTTACTAAACCTTACCAGCATAAGGTGGAGAAAGAATGTGCAGACATTCTCGGACTGTTTGCTGTTAAACCAGAGCATAAGCAACTCATTATAGATGCTGGAGCCTTGCCCTGTCTTGTAGATTTGTTAAGGAGGCACAAGACCAGTACCATTTCTCATCCACTTGTTGCTCTTCTAAGGAGAGTAGCTGATGCAATACACAACCTGGCCTCCGAAAATACCGTCATTAAGACCCTTGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGTCAGAGAGGTACAGAAAGCAGCTGCATGGGCGTTGGCAACTCTTGCATTGAATAATGATGACAATAAAAAACAGATTGTTGAATGCAATGCATTACCCACTCTTGTACTAATGCTTCGATCAAAGGATCCTACAATACATTACGTGGCGGTTGTTGTGATTGAAAATCTGGTTCATTCATCACCAGATATTATGAAAGAAGTGCTTCTAGCTGGGGCTTTACAACCTGTCATTTGTTTACTTAGGTAA 939 0.4356 METSGVTEDQRRALVLYLNSQQICCFELAIFLDPRDSQQPMITFVEIVEFLNSALSLSPSNRAAVKRAFLTIMDYAKIGTAFVVVFVFPALTEFFLFIIAGGGTWIDTMVTYGVVPALVKHLRAPESSKVDSDVFTKPYQHKVEKECADILGLFAVKPEHKQLIIDAGALPCLVDLLRRHKTSTISHPLVALLRRVADAIHNLASENTVIKTLVRMEGGIPPLVELLEFNVREVQKAAAWALATLALNNDDNKKQIVECNALPTLVLMLRSKDPTIHYVAVVVIENLVHSSPDIMKEVLLAGALQPVICLLR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03508 312 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 218 253 IPR000225 GO:0005515
Pumo4g03508 312 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 168 218 IPR000225 GO:0005515
Pumo4g03508 312 Gene3D - 194 312 IPR011989 -
Pumo4g03508 312 SMART arm_5 249 289 IPR000225 GO:0005515
Pumo4g03508 312 SMART arm_5 157 205 IPR000225 GO:0005515
Pumo4g03508 312 SMART arm_5 207 247 IPR000225 GO:0005515
Pumo4g03508 312 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 43 311 IPR044282 -
Pumo4g03508 312 SUPERFAMILY ARM repeat 102 307 IPR016024 -
Pumo4g03508 312 Gene3D - 21 193 IPR011989 -
Pumo4g03508 312 Pfam Armadillo/beta-catenin-like repeat 211 246 IPR000225 GO:0005515
Pumo4g03508 312 Pfam Armadillo/beta-catenin-like repeat 249 288 IPR000225 GO:0005515
Pumo4g03508 312 Pfam Armadillo/beta-catenin-like repeat 158 204 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03508 Pumo-Chr4 73371631 73373063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03508 158 306 U-box Gene Family AT5G42340 33.557 4.06e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03508 - - csav:115722483 262.307