Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03507 ATGACAAAGTCTTCTAGTGAAAAGAATGGACTGAAGAAGGGCCCATGGACCCCAGAGGAAGATCAGAAACTCATCGATTACATTCAGAAACATGGGCATGGGAAATGGCGAACCCTTCCCAAAAATGCAGGACTAAGAAGATGTGGAAAGAGTTGTCGGCTTCGCTGGGCAAACTACTTGAGGCCAGATATAAAGAGAGGGAGATTCTCATTCGAAGAAGAAGAAGCCATCATCCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACCCACATCAAGAAAAAGCTATTGAAGATGGGGATTGATCCAGTGACTCACACACCTCGCCTTGATGTTCTACAACTTGCCAACATTCTCAACACATCTTTATACAATTCACCACCCCAATTTAACTACCCTGCTCTTTCTGGAATTGGAAGATCATTGATAAACCCAAGCCAACTACTAAGTTTGCTCACTACCCTGCTATCATGTCCAAGCAGAAACAACTCTGATGTATTGAATCAGCATAATTACCAACTTATTAGTGGTAGCACTCCATTGCAAAATCAACCCCAATGTTCCCAAATGCAACTTGATTCTATACAAGCCTTCCAACCAAACCAACCCCATGTCTCACTTCAAGAAAACCATATTGCTAAGTCTAATTCTAATCCACTGAATATGGAACCCCAACTTATGAAAACTAAAATAGAGCATCAAATCACTCCAATTGCTACCTCTTTTAGCCACCAAAACACACTACCAAATTTGTGGCACTATAATAATGAATGTCACATATCAGATCTACCAATGGCCCAATCATCATCAGCTATGCAATGTTTCCCTTCTCCCAAGTTCAATTCTATATTCAACAATCTCTTGGAAAATCAGAATTTGTGTAACAACAACGAGGGGATGCCAAATTTCAATCTAAGTTCACTGTTATCGTGCACACCCTCATCTTCTTGCCCAAGTACTTTGAATTCATCGTCTTCCACGACATTTGTCAATGGAACCACTGAAGATGAAAGGGACACTTACGGCAGCAACATGTTGATGTATAACATTTCAAATGGCTTGAATGACTCTGGACTTTTGTGA 1140 0.4044 MTKSSSEKNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLRRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVLQLANILNTSLYNSPPQFNYPALSGIGRSLINPSQLLSLLTTLLSCPSRNNSDVLNQHNYQLISGSTPLQNQPQCSQMQLDSIQAFQPNQPHVSLQENHIAKSNSNPLNMEPQLMKTKIEHQITPIATSFSHQNTLPNLWHYNNECHISDLPMAQSSSAMQCFPSPKFNSIFNNLLENQNLCNNNEGMPNFNLSSLLSCTPSSSCPSTLNSSSSTTFVNGTTEDERDTYGSNMLMYNISNGLNDSGLL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03507 379 FunFam MYB-related transcription factor 12 65 - -
Pumo4g03507 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pumo4g03507 379 SMART sant 65 113 IPR001005 -
Pumo4g03507 379 SMART sant 12 62 IPR001005 -
Pumo4g03507 379 CDD SANT 68 111 IPR001005 -
Pumo4g03507 379 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pumo4g03507 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pumo4g03507 379 CDD SANT 15 60 IPR001005 -
Pumo4g03507 379 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pumo4g03507 379 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pumo4g03507 379 Gene3D - 12 65 - -
Pumo4g03507 379 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pumo4g03507 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 268 - -
Pumo4g03507 379 Gene3D - 68 115 - -
Pumo4g03507 379 FunFam Transcription factor MYB39 68 129 - -
Pumo4g03507 379 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03507 Pumo-Chr4 73341351 73343642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03507 7 379 MYB Transcription Factor Family AT4G21440 45.550 2.64e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g03507 Myb_DNA-binding 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03507 K09422 - gmx:100820398 645.966