Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03486 ATGAACGGGAAGGCCAACGTTTCCAAAGAGCTCAACGCCAAGCACAAGAAGATACTGGAAGGACTTCTTAAATTGCCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATTTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTTCGTTCTGCAACCCTGGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCGATGGGAAACGAGAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGACGAGAAGAGATGGGTTCCAAGAGATGGGAATTCAAAAACACCTTCTGGATTGCGGGAAGAGAAAAGTCCTTCACGTTGGCAGAGGCCTGTGGAGAGAAGTGGTTATGCTGCTGTTTCTGAGAATACATTCGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCCTACCACAAGAATTAATGTTCCTGCTCCTCCCAGAGCATCTGAGCAGGTAACTCCTATTACCAAACCTCAGCATGTGGAGAAAGTGGAACCAGTAGCACCCCAACCACAAGCACCCAAACCACAAGCCCCTCAACCACAAGCCCAACCACAAGCTGAAACATCTAAACAGGCTACGGAAACAGTTCAAAATACCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGGCCCCAATGAAAATGGCTCTGAGGCAGCTGGTACAACTACTGATGATAATCACTGGGCAGGTTTTCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAGACTACTCTGCTGAAAGCAGCTGATAGTACTCTAGCTTCTGCATCTGGAATTGAGGATCTTTTCAAAGATTTACCTTCTGTGACACCAAGCTTGACTCCAGAAAAACCACAGAAAGATGTGAAAAATGATATCATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTATGCATCAACAGCAGCTTGCGATGCTAGCACAGCAGCAGTCTCTTCTAATGGCTGCTGCAGCTAAATCTACTGGTGGGGATCCCAGGCATCCTGCTAGCATACAACAACCTAGACCCAATGTTCCTATCCAAAGTTGGCCAGCTACTGGCTACTCGATTCCTGGAGTAATGCCCATGGGTGGTCAGGGAGAGCTGCAAAAACTTATGCAGGGTCAGACTAGGAACATGACCCCAGCACATTTTGTAGGGAGCTCTGTTCAATATCCACCATCCAGTTTTTATGGTATGGGACAAGTTCAAGTTGCTCCTCCAGTTAACGGTATGATGACGACAATGGGAGTGAGTAAACCTCAGTCAGGAGCTCCAGTGTCATCTACCCCTACACGGTCTGCGAAGGATTATGATTTTTCCTCCTTAACACAGGGGATGTTTACAAAACAGTGA 1482 0.4528 MNGKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYDEKRWVPRDGNSKTPSGLREEKSPSRWQRPVERSGYAAVSENTFEERKKIQPSNAIPTTRINVPAPPRASEQVTPITKPQHVEKVEPVAPQPQAPKPQAPQPQAQPQAETSKQATETVQNTPPKVDYATDLFNMLSMDGPNENGSEAAGTTTDDNHWAGFQSAAEVSTAEKTTLLKAADSTLASASGIEDLFKDLPSVTPSLTPEKPQKDVKNDIMSLFEKGNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSTGGDPRHPASIQQPRPNVPIQSWPATGYSIPGVMPMGGQGELQKLMQGQTRNMTPAHFVGSSVQYPPSSFYGMGQVQVAPPVNGMMTTMGVSKPQSGAPVSSTPTRSAKDYDFSSLTQGMFTKQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03486 493 CDD ArfGap 19 117 - -
Pumo4g03486 493 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Pumo4g03486 493 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Pumo4g03486 493 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Pumo4g03486 493 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Pumo4g03486 493 MobiDBLite consensus disorder prediction 123 145 - -
Pumo4g03486 493 MobiDBLite consensus disorder prediction 253 271 - -
Pumo4g03486 493 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Pumo4g03486 493 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Pumo4g03486 493 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 493 IPR044520 GO:0005096
Pumo4g03486 493 MobiDBLite consensus disorder prediction 220 243 - -
Pumo4g03486 493 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Pumo4g03486 493 MobiDBLite consensus disorder prediction 460 493 - -
Pumo4g03486 493 MobiDBLite consensus disorder prediction 203 271 - -
Pumo4g03486 493 MobiDBLite consensus disorder prediction 123 191 - -
Pumo4g03486 493 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Pumo4g03486 493 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03486 Pumo-Chr4 72919005 72924610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03486 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 2.02e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03486 K12486 - gmx:100780452 854.358