Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03472 ATGGAAAGCACCGACTCATCAAGCGGTTCACAACAACCGAACCTGCCACCGGGGTTTCGGTTCCACCCCACCGACGAGGAGCTTGTGGTTCACTATCTCAAGAAAAAAGCAGCTTCTGCTCCTCTTCCGGTAGCCATAATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGCTAAGGCCTCGTTTGGGGAGCAGGAGTGGTATTTCTTTAGTCCGAGGGACAGGAAGTATCCGAACGGCGCGAGGCCAAACAGGGCGGCCACATCTGGGTATTGGAAGGCTACTGGGACTGATAAGCCTGTGTTGACCTCTGGAGGGACCCAAAAGGTTGGGGTGAAGAAAGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGGATCAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCACCTGGGTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGGCTCCCATGGAGAATGACAGGGAAGACTCAATGGAAGACATGATGGGAGGGATTCCTCCTATCAACGTGGGCCACATGAGAGCGAGGTTTCATCTTTCAAACATGTCCACAGGCTACAACGGTGCATTGTTGGAAAATGACCAGAACATGTTGGAAGGGATGATGATAGGTAACAACGGAGGGATGAACACAACTACTCCTACAACACCTGGTGCCATGTCATCACAGTTGGGGGGAGCCTCAAACTCCAAGGCAGAGCTTTCTTTTGTGCCAACCATGACTCACTCTTCAAACACTTCCAAGAGAACACTCTCATCACTGTATTGGAATGATGAGGATGTGGCAGGAACCTCATCATCGAACAAAAGGTTCAATTTGGAAAGTGGGGACAATAATAATAATAATCATGGAAGTGTTGTGAGGACTGATCAAGAGAATGGCACTGCTACCTCTATTGCCACTCTGCTTAATCAACTCCCTCAAACCCCTTCATTGCACCAACAATCAATGTTGGGATCAATAGGTGATGGTCTACTTAGAACAACATACCAAATACCAGGAATGAATTGGTATGCTTAG 1122 0.4822 MESTDSSSGSQQPNLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRAPMENDREDSMEDMMGGIPPINVGHMRARFHLSNMSTGYNGALLENDQNMLEGMMIGNNGGMNTTTPTTPGAMSSQLGGASNSKAELSFVPTMTHSSNTSKRTLSSLYWNDEDVAGTSSSNKRFNLESGDNNNNNHGSVVRTDQENGTATSIATLLNQLPQTPSLHQQSMLGSIGDGLLRTTYQIPGMNWYA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03472 373 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Pumo4g03472 373 PANTHER NAC TRANSCRIPTION FACTOR 56 15 223 - -
Pumo4g03472 373 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Pumo4g03472 373 MobiDBLite consensus disorder prediction 1 20 - -
Pumo4g03472 373 MobiDBLite consensus disorder prediction 1 17 - -
Pumo4g03472 373 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Pumo4g03472 373 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Pumo4g03472 373 FunFam NAC transcription factor 56 24 181 - -
Pumo4g03472 373 MobiDBLite consensus disorder prediction 299 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03472 Pumo-Chr4 72759200 72761447 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03472 1 373 NAC Transcription Factor Family AT3G15510 54.615 4.30e-127 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g03472 NAM 8.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03472 - - gmx:100170710 655.595