Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03471 ATGGGAGTTCAAGAGAAAGACCCTCTTTCCCAATTGAGTTTGCCTCCTGGTTTTCGGTTTTACCCCACCGATGAGGAGCTTCTTGTTCAGTATCTATGCCGCAAGGTCGCTGGCCACCATTTCTCTCTTCCAATCATTGCCGAAATTGACTTGTACAAGTTCGACCCCTGGGTTCTTCCAAGCAAGGCGATTTTTGGTGAGAAAGAGTGGTACTTTTTCAGCCCTCGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGCGACGGGTTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAAGGTAGAAAAGTTGGCATAAAAAAAGCCCTCGTTTTCTACGTTGGCAAAGCCCCCAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTCGACTCTTCCAGAAAGAACACTGGCACCAAGCTGGATGATTGGGTTCTGTGTCGTATATACAAGAAGAACTCCAGTGCACAGAAGGCCGTGCAAAACGGCGTTGTTTCGAGCAACGAGCACACTCAATACAGCAACGGTTCCTCGTCCTCTTCTTCGTCCCACCTCGACGACGTTTTGGAGTCTCTGCCATCGATTGATGAAAGGTGTTTCGCGATGCCACGTGTCAACACGCTGCAGCAACAACAGCACGAGGAGAAGGTCAATGTTCAGAACTTCGGTGCAGGGGGTTTAATGGACTGGGCCAACCCTTCGGTTCTGAATTCGGTCGCTGATTTCGTTTCGGGGAATAATCAAGTGGTGCAGGACCAAACACAGGGGATGGTGAATTACAATGCGTGCAATGACCTTTATGTCCCCACGATGTGCCACGTGGACTCGTCGGTTCCGCAGAAGATTGAGGAAGAGGTGCAAAGCGGCGTGAGAAACCACCGGGTCGAGAATAATAATAATAATTCATGGTTTCTTCAGAATGATTTCACACAAGGATTCACAAACTCGGTGGACACGTGCGGGTTTAAGTACCCGGTTCAGCCGGTGGGGTTCGGGTTCAGGCATTGA 1038 0.5019 MGVQEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAATGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKNTGTKLDDWVLCRIYKKNSSAQKAVQNGVVSSNEHTQYSNGSSSSSSSHLDDVLESLPSIDERCFAMPRVNTLQQQQHEEKVNVQNFGAGGLMDWANPSVLNSVADFVSGNNQVVQDQTQGMVNYNACNDLYVPTMCHVDSSVPQKIEEEVQSGVRNHRVENNNNNSWFLQNDFTQGFTNSVDTCGFKYPVQPVGFGFRH 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03471 345 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Pumo4g03471 345 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Pumo4g03471 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 230 - -
Pumo4g03471 345 FunFam NAC domain-containing protein 72-like 23 167 - -
Pumo4g03471 345 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Pumo4g03471 345 MobiDBLite consensus disorder prediction 170 197 - -
Pumo4g03471 345 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03471 Pumo-Chr4 72735632 72737667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03471 1 285 NAC Transcription Factor Family AT3G15500 61.204 1.61e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g03471 NAM 8.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03471 - - gmx:100170718 645.58