Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03424 ATGTCAGCCTTGGAGCAATTCTCAGTCTCTGGCAACAATTTATCTGGCCAGTTAAGCAAGCAACTAAGTAAGCTCTCTAACCTAAAAACTTTGGTGGTTTGTGGGAACAGGTTTTCTGGGGAAATCCCAAATGTGTTTCGGAACCTTTTGCAGCTAGAAAAATTTGAAGCACATGCCAATTCATTTTCTGGACCCTTGCCTTCCACCTTGGCTTTATGCTCTAAGCTTAGGGTGCTTGATCTTCGAAATAATTCCTTGTCAGGGCCAATTGGTCTTAATTTCACTGGCTTGTCCAATCTTCAAACAGTTGACCTTGCTACTAATCATTTCATTGGACCCCTTCCAACTTCCCTGTCCTATTGCCGTGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAACTGGTTCTGTCCCTGAAAACTATGCCAACCTCACTTCACTTTTGTTTATATCCTTTTCCAACAACAGCATTGGGAACTTATCTGGGGCACTGTCTGTTCTGCAGCAGTGCAAAAATCTCACCACCCTTATCCTCACTAAGAATTTCCATGGTGAGGAAATTTCAGAAAGTGTGACAGTAGGATTTGAGAGCCTTATGATTTTAGCGCTTGGAAATTGTGGTCTTAAAGGCCGTATTCCTTCTTGGTTATCCAATTGCAGGAAGTTGGCAGTTCTTGACTTTTCTTGGAATCATTTGAATGGTAGTGTTCCTTCTTGGATTGGTCAGATGGACAGTTTGTTCTATTTGGATTTCTCAAATAATTCTCTCACAGGAGAAATACCAAAAACTCTGACAGAGTTGAAGGGCCTCATGTGTGCAAACTGTAACAGAGAAAATCTTGCCGCTTTTGCATTCATTCCTCTCTTTGTCAAGAGAAACACAAGTGCAAGTGGACTGCAATATAATCAGGCCTCAAGTTTCCCTCCTTCAATTCTCTTGAGCAATAACATGTTGAGTGGAAATATATGGCCTGAAATTGGTCAATTGAAAGCACTGCATGTCTTGGATTTAAGCAGAAACAACATCACTGGTACCATTCCTAGCACTATTTCAGAGATGAAGAACTTGGAATCATTAGATTTATCTTATAATGATCTCTCTGGAGAAATTCCTCCATCATTTAACAACCTCACATTCTTGTCAAAGTTCAGCGTGGCACATAATCGCTTAGATGGACCAATTCCAACTGGAGGGCAGTTTTTAAGCTTCCCTAGTTCAAGTTTTGAGGGCAACCTGGGGCTTTGTAGGGAAATTGATTCTCCTTGCAAGACTGTCAACAATACAATTCCTAACATTTCTTCTGGTTCTTCCAAAAAACTTGGTAGAAGCAATGTCCTTGGCATAACAATCAGTATAGGGGTAGGGCTTGCACTGCTTCTTGCAATTATTCTGCTAAGAATATCAAAGAGGGATGACGATAAGCCTATGGATAACTTTGATGAGGAACTCAATAGCAGGCCACACAGGTTATCCGAAGCACTTGTTTCCTCAAAGTTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTTACAGTTGCAGATTTGTTAAAATCCACTAACAATTTCAACCAGGCAAATATTATTGGTTGTGGCGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGCACAAAAGCAGCTATCAAGAGACTTTCAGGGGACTGTGGTCAGATGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTGAAAGGTTATTGTCGGCATGGCAATGACAGATTGCTAATATACTCATACTTGGAGAATGGAAGCTTGGATTATTGGCTACATGAGTGTGTGGATGACAATTCAGCTCTCAAATGGGATGCAAGGCTCAAGATTGCACAGGGCGCTGCTCGTGGATTAGCTTACTTGCATAAGGGGTGCGAACCATTCATAGTGCATCGAGATGTTAAATCTAGCAACATACTTTTGGATGACAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCGCGAGGCTACTTCAACCATATGACACTCATGTCACAACTGACTTGGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAGACACTGACAGCAACCTTCAGGGGTGACGTTTATAGTTTCGGTGTTGTTCTTCTCGAGCTTCTTACTGGTAGAAGGCCTGTGGAAGTAATCAAGGGGAAAAATTGCAGAAATCTGGTGTCTTGGGTGTTTCAGATGAAATATGAGAATAAGGAGCAGGAAATTTTTGATCCAGCAATTTGGCATAAGGATCATCAGAAACAGCTATTGGAGGTGTTTGCCATTGCTTGTAAATGTCTAAACCAAGATCCTAGGCAGAGACCCTCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGTTCTCAACAGTAG 2415 0.4128 MSALEQFSVSGNNLSGQLSKQLSKLSNLKTLVVCGNRFSGEIPNVFRNLLQLEKFEAHANSFSGPLPSTLALCSKLRVLDLRNNSLSGPIGLNFTGLSNLQTVDLATNHFIGPLPTSLSYCRELKVLSLARNGLTGSVPENYANLTSLLFISFSNNSIGNLSGALSVLQQCKNLTTLILTKNFHGEEISESVTVGFESLMILALGNCGLKGRIPSWLSNCRKLAVLDFSWNHLNGSVPSWIGQMDSLFYLDFSNNSLTGEIPKTLTELKGLMCANCNRENLAAFAFIPLFVKRNTSASGLQYNQASSFPPSILLSNNMLSGNIWPEIGQLKALHVLDLSRNNITGTIPSTISEMKNLESLDLSYNDLSGEIPPSFNNLTFLSKFSVAHNRLDGPIPTGGQFLSFPSSSFEGNLGLCREIDSPCKTVNNTIPNISSGSSKKLGRSNVLGITISIGVGLALLLAIILLRISKRDDDKPMDNFDEELNSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKAYLPNGTKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDDNSALKWDARLKIAQGAARGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLARLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKYENKEQEIFDPAIWHKDHQKQLLEVFAIACKCLNQDPRQRPSIEVVVSWLDSVRFDGSQQ 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03424 804 ProSiteProfiles Leucine-rich repeat profile. 356 378 IPR001611 GO:0005515
Pumo4g03424 804 Pfam Leucine Rich Repeat 75 89 IPR001611 GO:0005515
Pumo4g03424 804 ProSiteProfiles Protein kinase domain profile. 523 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03424 804 FunFam Leucine-rich repeat receptor-like protein kinase 599 804 - -
Pumo4g03424 804 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 90 - -
Pumo4g03424 804 FunFam Phytosulfokine receptor 1 486 598 - -
Pumo4g03424 804 FunFam Tyrosine-sulfated glycopeptide receptor 1 94 428 - -
Pumo4g03424 804 Gene3D Ribonuclease Inhibitor 121 430 IPR032675 -
Pumo4g03424 804 CDD STKc_IRAK 529 795 - -
Pumo4g03424 804 Gene3D Transferase(Phosphotransferase) domain 1 599 800 - -
Pumo4g03424 804 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Pumo4g03424 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Pumo4g03424 804 Pfam Leucine rich repeat 332 391 IPR001611 GO:0005515
Pumo4g03424 804 SUPERFAMILY L domain-like 2 402 - -
Pumo4g03424 804 SUPERFAMILY Protein kinase-like (PK-like) 505 794 IPR011009 -
Pumo4g03424 804 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 90 - -
Pumo4g03424 804 PRINTS Leucine-rich repeat signature 333 346 - -
Pumo4g03424 804 PRINTS Leucine-rich repeat signature 354 367 - -
Pumo4g03424 804 Gene3D Phosphorylase Kinase; domain 1 486 598 - -
Pumo4g03424 804 Gene3D Ribonuclease Inhibitor 1 120 IPR032675 -
Pumo4g03424 804 SMART serkin_6 523 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03424 804 Pfam Protein kinase domain 524 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03424 Pumo-Chr4 71877881 71882299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03424 4 800 Receptor kinase-like Gene Family AT1G55610 35.528 1.71e-151 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Pumo4g03424 Pkinase 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03424 - - gmx:100797812 1490.32