Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03423 ATGCTCCCAAAGACTGGCTCTAACCGTTTTCTTGCTCCAGCACTTTCTTCTTCTTGTTCATCATCATTGTCAGCACTCAATATGGAGATCAAGAGTAGAGAGAGGAGGCAAGTGTCAATTGAGAAGGTGAGGAGAGACAGCACAGTTGAAGTAGAGGATGAAGAAGAGGAGGAGGATGAAAGTGTGGCTGGTGGTGAGGGTGGTCTTGCAGAAGATGAGAAGAAGCAAGGTGGTGGAGGGAGTGGGAGAAGAGGGTCAAGTGGGGGTGGAGGAGTTTCTCCACCTTCTTGTCAGGCTGAGATGTGTGGTGCTGATTTGACAGTTGCAAAGAGGTATCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCACCTTCTGTGATGGTTGCAGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCCAGACATAATGAGCGGCGCAGGAAAAGCATTACTGAAACTTGCAATGAAGGATGCAGTGGCAGCAAAGGGCAGCACCCTACAGAAAGCCACTGCAGAAATGCTGATGACTGGGGAGGAATTCAGATGAACATTGCCAAGAATTCTGGCTACAAGTCCTTCCATATCAGATGA 657 0.4932 MLPKTGSNRFLAPALSSSCSSSLSALNMEIKSRERRQVSIEKVRRDSTVEVEDEEEEEDESVAGGEGGLAEDEKKQGGGGSGRRGSSGGGGVSPPSCQAEMCGADLTVAKRYHRRHKVCELHSKAPSVMVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSITETCNEGCSGSKGQHPTESHCRNADDWGGIQMNIAKNSGYKSFHIR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03423 218 MobiDBLite consensus disorder prediction 50 66 - -
Pumo4g03423 218 MobiDBLite consensus disorder prediction 173 194 - -
Pumo4g03423 218 Gene3D - 88 158 IPR036893 GO:0003677|GO:0005634
Pumo4g03423 218 Coils Coil 147 167 - -
Pumo4g03423 218 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 66 172 IPR044817 GO:0003677
Pumo4g03423 218 MobiDBLite consensus disorder prediction 31 49 - -
Pumo4g03423 218 FunFam Squamosa promoter-binding-like protein 14 89 158 - -
Pumo4g03423 218 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Pumo4g03423 218 MobiDBLite consensus disorder prediction 175 189 - -
Pumo4g03423 218 Pfam SBP domain 97 170 IPR004333 GO:0003677
Pumo4g03423 218 SUPERFAMILY SBT domain 95 175 IPR036893 GO:0003677|GO:0005634
Pumo4g03423 218 MobiDBLite consensus disorder prediction 31 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03423 Pumo-Chr4 71855931 71857462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03423 27 186 SBP-box Gene Family AT3G60030 48.171 5.58e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo4g03423 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03423 - - gmx:100305703 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03423 4 71855931 71857462 Pumo2g00811 2 12328435 12330411 ECH
Pumo4g03423 4 71855931 71857462 Pumo4g03423 4 71855931 71857462 ECH