Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03420 ATGGCTGATGTGGCAGGTCTAGTTGAGGCATCTGGATCGAGATTCAGTTCATTGGAGCTTATTGGGCAGGGATCATTTGGAGACGTCTATAAAGCGTTTGACAGGGAGCTCAACAAAGAAGTTGCCATCAAAGTAATTGACTTGGAAGAATCAGAGGATGAAATAGACGATATCCAGAAGGAAATATCTGTTCTGTCCCAATGTCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTACTCCAATCAGGTCCTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATCTACACAGTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTGTCAGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAATTAACAAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCACCTGAGGTTATTCAAAATACAGATGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGGATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCTCCACAGCTAGATGACCATTTTTCTCGTCCAATGAAAGAATTTGTTTCATTGTGCTTAAAGAAGGTTCCTGCTGAGGCAAGTAGGCCAAGTGCTAAGGAACTTCTCAAGGACCGTTTTATTCGGAATGCTAGGAGGAGTTCAAAGCTTTCAGAAAGAATAAGGGAGCGTCCAAAGTACCAAATAAAGGAAGAAGATCTGGAGACACCCAGAAATGGTTCAAGTGGGATGGGGGAGGCATCAGGTACTGTAAAGGTGGCAAGAGATTTAAGAGGCGAAGAAAATAATCAACCCAGTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTACGTAATGCTTCTCGACCACCTCAGTTTAGAGATAAGAAAACTGAAGTTTCACATAATCAGCTTACCCAAAGAAAAGCTCCAGAGAGTGGCTATCAAGGGGGATCTGTCAAAAGAAGTGCACTTAATGAGTCACTTGAAAGTTCCTTTGGAAGAGATCCTAGAGTTCCCCACCATGATGAGCATCTGGATAATGAAGATGATGAGTTATCTGGGAATGGATCAGGAACTGTTGTTATTCGATCTCCAAAAGGATCAAGGTCATCTGCGTTTCGTGACCAGAGCTCTCGGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTTCAAGTGGAACTGTTGTTTTACGTGGCCAGCATGATGAGTCTGATTCTCCACAGACACCAAGGTCTCGACTGGGACATAATGAAAGAAATTCAAATGCCTCAATGGAAGATAGTGCTGCAAATCTTGCTGAGGCAAAGGCTGCTATCCTGAGGAAATCGAATAGAGAGAGATTTGCCCGGGGAAAAATCAACAATGATAGACAGGAAAGCAAGAGAGATCAAAAGGCTAGCAGCTCTGATTCTTCAAGACCACATGGTGAATATGATGCACACAAGAGCATGTTAAGATCACATCATGCTAGTGATGACAGAGAAAGTGCTAAAATAATGTCATCGTCGGTGCCGTTATCTGTTTTACTTATTCCTTCATTAAAAGAGGCCATTGCTGATGATCCAGAAGGGTCAATCGTGAGGGAAGTTATCAATTCTTTAATACACATGGAGGGTACAAAACCTAAATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGCGATTGGCAAGTTCAAAGGAAGATTCATTAAAGGACCTGCAGGGACTAGCAGGCCAGTTATTCAGCAAGACCAAGTCAGCTGAAGAAACCCGAAACGCAGAGGCTGATAACAGCAAGAAACATAATCCAAATAGCAATTTAAGCCCACTAGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAACCTCACGGGATATAAACCCATCTTGA 2079 0.4252 MADVAGLVEASGSRFSSLELIGQGSFGDVYKAFDRELNKEVAIKVIDLEESEDEIDDIQKEISVLSQCRCPYITEYYGSYLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAVDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDDHFSRPMKEFVSLCLKKVPAEASRPSAKELLKDRFIRNARRSSKLSERIRERPKYQIKEEDLETPRNGSSGMGEASGTVKVARDLRGEENNQPSDQGKTLKSAGWDFSIGGSQGTGTLRNASRPPQFRDKKTEVSHNQLTQRKAPESGYQGGSVKRSALNESLESSFGRDPRVPHHDEHLDNEDDELSGNGSGTVVIRSPKGSRSSAFRDQSSRSSSSYASFEDASSSGTVVLRGQHDESDSPQTPRSRLGHNERNSNASMEDSAANLAEAKAAILRKSNRERFARGKINNDRQESKRDQKASSSDSSRPHGEYDAHKSMLRSHHASDDRESAKIMSSSVPLSVLLIPSLKEAIADDPEGSIVREVINSLIHMEGTKPKSCDVLVKKLLQRLASSKEDSLKDLQGLAGQLFSKTKSAEETRNAEADNSKKHNPNSNLSPLARFLLSRWQGQTSRDINPS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03420 692 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03420 692 MobiDBLite consensus disorder prediction 512 565 - -
Pumo4g03420 692 MobiDBLite consensus disorder prediction 277 298 - -
Pumo4g03420 692 Gene3D Transferase(Phosphotransferase) domain 1 11 303 - -
Pumo4g03420 692 MobiDBLite consensus disorder prediction 512 567 - -
Pumo4g03420 692 MobiDBLite consensus disorder prediction 420 472 - -
Pumo4g03420 692 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03420 692 MobiDBLite consensus disorder prediction 647 670 - -
Pumo4g03420 692 MobiDBLite consensus disorder prediction 277 497 - -
Pumo4g03420 692 MobiDBLite consensus disorder prediction 371 397 - -
Pumo4g03420 692 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Pumo4g03420 692 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03420 692 MobiDBLite consensus disorder prediction 325 355 - -
Pumo4g03420 692 SUPERFAMILY Protein kinase-like (PK-like) 13 290 IPR011009 -
Pumo4g03420 692 FunFam serine/threonine-protein kinase dst1 isoform X1 12 303 - -
Pumo4g03420 692 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 646 - -
Pumo4g03420 692 MobiDBLite consensus disorder prediction 401 419 - -
Pumo4g03420 692 Coils Coil 41 68 - -
Pumo4g03420 692 MobiDBLite consensus disorder prediction 479 497 - -
Pumo4g03420 692 CDD STKc_MST3_like 13 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03420 Pumo-Chr4 71790206 71800528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03420 1 689 MAP Kinase Kinase Kinase Kinase AT3G15220 65.616 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Pumo4g03420 Pkinase 9.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03420 K08838 - gmx:100815042 1212.98