Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03418 ATGGACAACTCTTACCACCACTTGGACCACACTGAAGCTCACTTGCCACCTGGTTTTCGGTTCCACCCCACTGATGAGGAGCTCATAACTTACTACCTTCTCAAGAAGGTTCTGGACAGCACCTTCACTGGTAGAGCCATAGCTGAAGTTGACCTTAACAAGAGTGAGCCATGGGAGCTCCCTGAGAAAGCTAAGATGGGAGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCAACTGGGTTAAGAACCAATAGGGCTACTGAAGCTGGTTACTGGAAAGCCACAGGGAAAGATAGAGAGATTTATAGCTCCAAGACTTGCTCTTTGGTGGGGATGAAGAAAACCTTGGTTTTCTACCGAGGTAGAGCTCCAAAGGGTGAGAAAAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCACTACCTTTCTCGCAACTCCAAGGATGAGTGGGTCATATCACGTGTGTTCCAGAAGAGTAACACCAACACCAATGGAGGAGGCTCCACCATATCTGCTTCAAGTAACTCCAAGAAGACAAGAATCAACAGCACCACCACCACCACCTCTCTCTGCCATGAACCAAGTTCACCCTCTTCAGTTTACCTTCCACCTCTTCTAGACTCTTCTCCATACCCCAACACCACCACTAACTTCACCGACCTTCACAACTGTTCCTATGACAGCACCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATAGCTGCAGCCACAGCTGCTGTTGTCTCCCCCAACAACAACTTCAACAATGCAAGCTTCGACCTTTCACCTTCTCAGCCTCTTGCAACGGACCCCTTTGCTAGGTTTCAGAGAAACGTTGGTGTTTCTGCTTTCCCAAGTTTGAGGTCTCTACAAGACAACCTTCAGTTGCCCTTTTTCTTCTCCCCGGCGGCGCAGCCATTCTCCGGCGGCGGCGGCTCCGGCGACTTCCTCAGCTGGCCAATGCCGGAGGAGCAAAGGCTGGTGGATGCTGTTTCCCACATGCCACTGGGGGTGTCGGAGCTTGATTGCATGTGGGGCTACTAA 1074 0.5037 MDNSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTNTNGGGSTISASSNSKKTRINSTTTTTSLCHEPSSPSSVYLPPLLDSSPYPNTTTNFTDLHNCSYDSTTKKEHVSCFSTIAAATAAVVSPNNNFNNASFDLSPSQPLATDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSPAAQPFSGGGGSGDFLSWPMPEEQRLVDAVSHMPLGVSELDCMWGY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03418 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 229 - -
Pumo4g03418 357 MobiDBLite consensus disorder prediction 171 211 - -
Pumo4g03418 357 MobiDBLite consensus disorder prediction 171 205 - -
Pumo4g03418 357 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
Pumo4g03418 357 FunFam NAC domain-containing protein 100-like 24 171 - -
Pumo4g03418 357 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Pumo4g03418 357 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Pumo4g03418 357 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03418 Pumo-Chr4 71764129 71766175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03418 1 357 NAC Transcription Factor Family AT5G53950 56.888 3.51e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g03418 NAM 2.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03418 - - gmx:100805987 588.571