Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03415 ATGGCTCCAAGAGACAGAGCCACCGCACTCGCCGGCCCAGGCCAGCCATCACCGGCGGCCCACAAAGAGATCCGCTACCGCGGCGTCCGGAAACGCCCCTGGGGCCGCTACGCCGCCGAGATCCGCGACCCCGGCAAAAAAACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCGCGCGCCTACGACACCGCTGCGCGTGAGTTTCGCGGCGCGAAAGCCAAGACCAATTTTCCGACACCCTCGGAACTCATCCTTAACAACAACACCGCGCGTAGTCCCAGCCAGAGCAGCACCCTCGACTCTTCCTCTCCGCCGCCGCTCGACCTCACCCTCACCCCTCTCTCCCCCGCCGTCTTCCCGGTGGCCCGTCCGGTTCTATTCTTCGACGCGTTCGCGCGTGCCGGACGCTGTGATCGCCGTCGCGCGCCGCGACACATGCGGCTTCGAACGCCCCGCCGCCGATTTCCGCCGCGGCGATACCGATTCTTCCTCCGTCGTCGGCGATTACGAGCGCCGCGGCCTCTTGGATCTCGACCTCAACGTGCCTCCTCGTCCCGAGGTTGCATGATTCGCCGCGTTTTGAAGAGCCTTATTCAGAGATCTGTTTTTTTTTTTTTTTTTTTCCTCGCTCGCAATTTTTCTCAGTTTTTTTGA 666 0.6306 MAPRDRATALAGPGQPSPAAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPTPSELILNNNTARSPSQSSTLDSSSPPPLDLTLTPLSPAVFPVARPVLFFDAFARAGRCDRRRAPRHMRLRTPRRRFPPRRYRFFLRRRRLRAPRPLGSRPQRASSSRGCMIRRVLKSLIQRSVFFFFFFLARNFSQFF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03415 221 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 148 - -
Pumo4g03415 221 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Pumo4g03415 221 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Pumo4g03415 221 MobiDBLite consensus disorder prediction 1 26 - -
Pumo4g03415 221 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Pumo4g03415 221 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Pumo4g03415 221 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Pumo4g03415 221 MobiDBLite consensus disorder prediction 81 111 - -
Pumo4g03415 221 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Pumo4g03415 221 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Pumo4g03415 221 MobiDBLite consensus disorder prediction 83 111 - -
Pumo4g03415 221 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Pumo4g03415 221 FunFam Ethylene-responsive transcription factor 2 25 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03415 Pumo-Chr4 71735828 71737101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03415 22 133 AP2-EREBP Transcription Factor Family AT3G15210 65.909 2.07e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g03415 AP2 8.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03415 K09286 - gmx:100813652 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03415 4 71735828 71737101 Pumo2g00803 2 12222504 12224481 ECH
Pumo4g03415 4 71735828 71737101 Pumo4g03415 4 71735828 71737101 ECH