Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03405 ATGCGATCATTGCCGTCTTCATTGGGTTCGTCGTCTCGATCGGGTTCGCGGCTTCGGAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAAGAGTACACTCGAAACCATGGTGAGTTGAATGAGGATAATCGGGATTTGAACCCTGATGCCGGGGTTCGTCGAAGCTCCCGGGTTCGCCGTGCCCCAGTGCTGCTCGACGCTTCTCCTGCTCCGTCGAAGAAACGGCGGAAGGTGGGGAGGGGTGGAATTGGTCGTGGTGTGGAGGGTGCCAAGAGTTTAGGGCGGGAAAATAGAGGTTCTGGCGGGGCTTGGAATTCTAGGTTGAGATCAAGAGTTGGCAATGTAGGTGTTAGGGTGAAGGAGGAGAGGGATTCGCCACGTGGGAAGAGGAAGCTTTTTGAGGGTGCAGTTGGAAGGAGGGGTGATGATGAGGTTGGTGGGAAAGAGGAGTTGGGAGGTTTGATGCCGAAAGTGGTTAAGTCGAAGAGACCGGGGAGGATTAAAGCCACAAAGCATGAGGAAGGGCATGAAGAGGATGTGTCTCATGGGAGTTTGGAGGAGACTAAGAGTCAGGAAGTCGAGATTGTGTGGAGCAGTGGTGAGGAGAGTGATTCTGATCCAGAAACCGAATCGTCGGCAGAGGATCAGATGGATGATTCGGATGGAAATGCCTCTCCTGTGACAAGGAATGAGGAGGGGGATCAGATGGATGATTCGGATGGAGATGTTCCTCCTATGATAGGGAATGAGGAGGGGGATCAGATGGATGATTCGGATGAAGATGTCCCTCCTATGATGGGGAATAAGGAGGGGGATCAGATGGATGATTTGGATGGAAATGACCCTCCAATAGTAGGGAGTGAGGAGAAGAACTTATCCGATGATTTGCAAATAGAGGAATGTGGTGGCAATGCTGAACCGTCTCTGGTGGAACATGTAGATAAAGTGGATGATCAGTTAGAGAGTGTGAAGGAAAACAAAAGTGTAGGTGATGTAGCTGAACAGGTAGATAATGAAGGATCCGTTGGTAAGGAGGTTGACGTCGATGAAAATGTCTTGAAAGATGCAAATGATGGTAAGGAGGTTGATGTTGAGGAAGATGTCTTGAAAGATGCAAATGGTGGGAGGATGGGCGAGTTGAAACATGCTTCAATTGACAAGCGTGGTCACCAGCGTATCAAAGAGGGCAGGCGGTGTGGTTTGTGTGGTGGAGGGAGCGATGGTAAGCCTCCGAAAAGGTTAGCTCAGGATAATGGTGAAAGTGAGAATGAAGCTTATAGTGGGTCGTCATCTTCAGAGGAGACTAATTATGATATCTGGGATGGTTTTGATGATGAACCTGGTTGGCTTGGGCGTCTCTTGGGTCCTATTAATGATCACTATGGTATTGCTAGAATATGGGTTCATCTGCACTGTGCTGTGTGGAGTCCAGAGGTTTATTTTGCAAACTTTGGATGCTTAAAAAATGTGAGGGCTGCACTTTTCCGAGGAAGAGCATTGAAGTGCACACGCTGTGGGAGGCGAGGGGCAACAACTGGTTGTCGCGTCGATCGTTGTCCAAGAACTTATCACTTGCCTTGTGCAAGAGCAAGTGGTTGCATCTTTGATCATCGTAAATTTCTTATAGCTTGCACAGATCATCGGCATCTCTTTCAACCTCGTGGTAATAAATATTTAGCCCGGATAAAGAAGTTGAAGGCTAGGAAAATGATGTGGGAGATAAGGAAGCGATCAAATGAAGCTTGCAGAAAAGATATTGGAGATGAAGAGAGATGGTTGGAAAATTGTGGAGAGGATGAAGAATTTTTGAAACGTGAGAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCAGTGTACATTGGGGGTTCAGAATCTGCCAGTGACAATTCATTTCAGGGATGGGAATCTGTTGCTGGGCTTGAAGATGTCATCCGCTGTATGAAAGAAGTTGTTATTTTACCTCTGCTATATCCCGAGCTCTTTGATAATTTAGGGCTTACACCTCCAAGAGGTGTTCTTTTGCATGGGCATCCTGGAACGGGGAAAACCTTGGTGGTCCGGGCATTGATAGGTGCATGTTCCCGTGGTGATAAGCGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAGTATGTTGGTGATGCTGAGCGTCAACTAAGACTATTATTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAAATAGATGGGCTGGCACCCCGCCGCACTAGGCAGCAAGATCAGACACATAGTTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTTTGAAATCTAGGGGTTCAGTTGTGGTCATAGGTGCAACGAACCGTCCTGAAGCTGTTGACCCAGCACTTAGGCGCCCTGGTAGATTTGATCGGGAAATTTATTTTCCATTACCATCAATTAAGGACAGAGCTTCCATTCTCTCGCTTCACACCCAGAAGTGGCCAAAACCCATTACCGGATCCTTGCTTGAGTGGATCGCAAGAAAAACACCTGGCTTTGCTGGTGCTGATCTCCAGGCTCTTTGTACCCAAGCGGCGATCAATGCATTGAAGAGGAATTTCCCTTTGCAGGAAGTCCTGTCTTTAGCTGCTGAAGAAAAACATTCTGGTTCTAAGCACATTCCTCTTCCATCCTTTGCAGTGGAGGAGAGGGATTGGTTAGAGGCTTTTTTTTCTTCCCCACTACCTTGCTCCCGGAGAGATGCTGGAAATGCTGCTAATGATGTAGTATGCTCCCCTCTTCCCATCCAACTTATTCCTTGTTTATTGCAGCCGTTATGCACTCTTCTTGTATCCCTTCATCTTGATGAACGTCTATGGTTACCACTTCCCATATCTAAAGCTGTAACAGTGATAAAGGATGTCATGATTTCTGCTCTAGACAAAAAGCAAAAGCCTTCTAATCGCTGGTGGTTGCACATGGATGATTTTCTTCAAGAAACAAATATTGTTTATGAGTTGAAGAGAAGGCTTACATGTTCTGGCATTTTATCTGCGGGCGACGGCATTGCTGGTTCTTATGATACTGTGGATGATGCCAATAATAACAGCTTGAAGTTAGAATCCTCCATAAGGAACCCTCTTGGCATGCGTAGTGGTTTATTTGCATTGACCAACAAATCAGGATTTCGGATATTAATTTCTGGAAATTCCCGATCTGGCCAGAGACATATTGCTTCTTGCCTTCTTCACTGCTTTATTGGGAATATTGAAATACAGAAGATTGATATGGCAACTATTTTACAAGAAGGGCATGGAGAAGTGGTGCAAGGGATTGGTCAGATACTAATGAAATGTGCTAGCAGGCAATCTTCCATAGTATTCTTGCCACGAATTGATTTATGGGCTGTGGAAAAACATTTACAAATTGCTGAAAGGACTGATTCATGTTTAATGATGGGCAAGTCTTGTTTCACACCAAACCAAGTTGTTGAGAAGGAAAATGAAAATGAGATTAGTACCGAGAAAAACTCAAACTCAACTGAGATGACCAAAGGCCAAGCCAACACAAAGGCTTCATATGCCTGGATGTCATTTATTGAGCAGGTGGAATCCATTGGTGTATCCACATCCTTGATGATTCTGGCTACTTCAGAAGTTCCCTATACAGATCTTCCACGCAAAGTAAGAGAATTCTTCAAGAGTTATCAATCTAAAGACGGCCAGTCAACTCCTTTGGAGCAGACAGTTCCTCGATTCTCTGTGCAGATTGATGAGAATTTTGATCATGACATGGTGATCAATCTATCTGCACTAGAGTTATTGAGAAATGTAGTTGAGCAGCTGGTTCAATTGATTCATCAGAGATCTCATGTTCATATGGGTGCCCAAAAGGGCAGAAGCCATGAATCAATTGAAGTTTGTAAAGATAAGGTATGTCAAAGAAAGGAAGATGGATCAGCCAATGATAAGAAGAGTGAAATCCAACTTGAATCTTTTACAAAAGTTCCACCAACACCCAACAACAAGTCACTGAAGGGAAAGTCAACTCTGTTGTTAGCAATATCCACATTTGGCTATCAAATTCTTTTATACCCACATTTTGCCGAACTTTGTTGGATCACTTCAAAACTCGATGAAGGTCCTTGTGCTGATGTAAGTGGACCTTGGAGGGGCTGGCCTTTCAATTCCTGTATAATTCGTCCTAATAATTCACACGACAAGGTGGCAGTTTCTTGTAGTTCTGGTGGCACTAAAAGCAGAGAAGCATCTGGTCTAGTCAGAGGCTTGATTGCTGTTGGTTTATCAGCTTACAGAGGTGTTTATAACTCAGTTAGGGAAGTTTCCCTTGATGTAAGGAAGGTTCTCGAGATCTTAATTGAGAAAATCAATACCAAAATTCAAGCTGGGAAAGATAGATATCAATATTTTCGTATTTTGTCACAAGTGGCTTATTTAGAAGACATGGTCAACAACTGGGCTTACTCCTTGCTAAGTCTGGAGAAGGATTCCCCCGAGCATAAAACAAAGGTTATACCAGCAAGTGGTGGGCCATTAAACAGTCATCTCACACTTGAAAATCACCAAACTGAAGGTGAGGACTGTCATTTGGTTGTTCCTGTAGATGGTAATGATTTGGAGACATTGGAGGGAAGTCACAAGGAAATTCCTGCTGAAACAACTGGATGTCTTGCCTCTAATGACAAAAATGATAATGTAGACATTATTGATTGTGATGATGGAAATGCTAGTTCTCAAGGATCTCTACAGAACCATTCTTTTTCTGATAAGAATATCAACAACTCTGCTGCTGCAAGCCAACCACTTTATCCATCCACTAGTCAGGAGAATGGGACACTATTTGGACAATCTGAATCTGTAACTGCTGGAAATAATGAAGAGGTGGATGGAGAACTAGGGATTTCAAAAGACTCGAACAAATCCATGTGCACTCAATCTGTGGTCCTTTCTGAAAATGGACTTCACACTGCTTGCGAATTGGAGACACAGAATGTTGAGATTGGTAACTTGCGGACCGACTTTGATCAGCCTCTTAGCTTGCCCTCTGTAGAGACCGGTGCTAAATCAAGTGATGTTAAATTTGATAAACATGAGAATGCTACAGATAATAATGTCTCTTCAAGTAATGGCGGTGGTCCTGCTGAATCTGGGGTTATTTGCTTGTATCAATGTTGCCCTGCATGTCTCCACAGTCTCCATCATTTGACAAAGAAAATACTTGTTGAAAAGTGGGGTTTAAACAGTGACCAGTGGACAGCAGAAGATGTACATGATGCTGTTGCATCATTATCTGTGGATCTTATTTCAGCAGTTAGAAAAAGCTTTATGCCTCAAGATTTCATTGATTCATCAAATAAAACCTCAAGACATGAAAAGCAGGAGGGAACACCTCTTGATTGTTTGAACCTGAGAATGTGTAATGCTGGAAACCAAGGCAAGGATGTTGTGCCAGCTGAATGTGTCTCTCACTCAGCAAGCCAACATGCAACTGCAATGGAAGGTATGGTACTGAATGAAGAATCATCCAAGCATGATCTTAAATTTGTTTTCAGAGATGGTGTACTAGTTTATATGGACCCAGATAAGGATATCTCAGTTCACTGTAAATTTGAGAACTTGTGCCTTTGTTCTCTAAGAGAGTTGATAGTAATGACAAAGCGCCCTTTTGATTAG 5673 0.4363 MRSLPSSLGSSSRSGSRLRKKHKRLDAICEEEYTRNHGELNEDNRDLNPDAGVRRSSRVRRAPVLLDASPAPSKKRRKVGRGGIGRGVEGAKSLGRENRGSGGAWNSRLRSRVGNVGVRVKEERDSPRGKRKLFEGAVGRRGDDEVGGKEELGGLMPKVVKSKRPGRIKATKHEEGHEEDVSHGSLEETKSQEVEIVWSSGEESDSDPETESSAEDQMDDSDGNASPVTRNEEGDQMDDSDGDVPPMIGNEEGDQMDDSDEDVPPMMGNKEGDQMDDLDGNDPPIVGSEEKNLSDDLQIEECGGNAEPSLVEHVDKVDDQLESVKENKSVGDVAEQVDNEGSVGKEVDVDENVLKDANDGKEVDVEEDVLKDANGGRMGELKHASIDKRGHQRIKEGRRCGLCGGGSDGKPPKRLAQDNGESENEAYSGSSSSEETNYDIWDGFDDEPGWLGRLLGPINDHYGIARIWVHLHCAVWSPEVYFANFGCLKNVRAALFRGRALKCTRCGRRGATTGCRVDRCPRTYHLPCARASGCIFDHRKFLIACTDHRHLFQPRGNKYLARIKKLKARKMMWEIRKRSNEACRKDIGDEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSESASDNSFQGWESVAGLEDVIRCMKEVVILPLLYPELFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACSRGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPRRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSIKDRASILSLHTQKWPKPITGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSLAAEEKHSGSKHIPLPSFAVEERDWLEAFFSSPLPCSRRDAGNAANDVVCSPLPIQLIPCLLQPLCTLLVSLHLDERLWLPLPISKAVTVIKDVMISALDKKQKPSNRWWLHMDDFLQETNIVYELKRRLTCSGILSAGDGIAGSYDTVDDANNNSLKLESSIRNPLGMRSGLFALTNKSGFRILISGNSRSGQRHIASCLLHCFIGNIEIQKIDMATILQEGHGEVVQGIGQILMKCASRQSSIVFLPRIDLWAVEKHLQIAERTDSCLMMGKSCFTPNQVVEKENENEISTEKNSNSTEMTKGQANTKASYAWMSFIEQVESIGVSTSLMILATSEVPYTDLPRKVREFFKSYQSKDGQSTPLEQTVPRFSVQIDENFDHDMVINLSALELLRNVVEQLVQLIHQRSHVHMGAQKGRSHESIEVCKDKVCQRKEDGSANDKKSEIQLESFTKVPPTPNNKSLKGKSTLLLAISTFGYQILLYPHFAELCWITSKLDEGPCADVSGPWRGWPFNSCIIRPNNSHDKVAVSCSSGGTKSREASGLVRGLIAVGLSAYRGVYNSVREVSLDVRKVLEILIEKINTKIQAGKDRYQYFRILSQVAYLEDMVNNWAYSLLSLEKDSPEHKTKVIPASGGPLNSHLTLENHQTEGEDCHLVVPVDGNDLETLEGSHKEIPAETTGCLASNDKNDNVDIIDCDDGNASSQGSLQNHSFSDKNINNSAAASQPLYPSTSQENGTLFGQSESVTAGNNEEVDGELGISKDSNKSMCTQSVVLSENGLHTACELETQNVEIGNLRTDFDQPLSLPSVETGAKSSDVKFDKHENATDNNVSSSNGGGPAESGVICLYQCCPACLHSLHHLTKKILVEKWGLNSDQWTAEDVHDAVASLSVDLISAVRKSFMPQDFIDSSNKTSRHEKQEGTPLDCLNLRMCNAGNQGKDVVPAECVSHSASQHATAMEGMVLNEESSKHDLKFVFRDGVLVYMDPDKDISVHCKFENLCLCSLRELIVMTKRPFD 1890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03405 1890 Pfam AAA+ lid domain 836 868 IPR041569 -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 1159 1178 - -
Pumo4g03405 1890 SMART AAA_5 671 812 IPR003593 GO:0016887
Pumo4g03405 1890 Gene3D - 636 810 IPR027417 -
Pumo4g03405 1890 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 811 904 - -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 1 294 - -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 325 346 - -
Pumo4g03405 1890 Pfam PHD-like zinc-binding domain 470 549 - -
Pumo4g03405 1890 PANTHER AAA DOMAIN-CONTAINING 16 1786 IPR045199 -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 400 435 - -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 1678 1711 - -
Pumo4g03405 1890 ProSitePatterns AAA-protein family signature. 780 798 IPR003960 GO:0005524|GO:0016887
Pumo4g03405 1890 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 395 551 - -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 1577 1617 - -
Pumo4g03405 1890 ProSiteProfiles Extended PHD (ePHD) domain profile. 437 549 IPR034732 -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 200 218 - -
Pumo4g03405 1890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 868 IPR027417 -
Pumo4g03405 1890 Pfam ATPase family associated with various cellular activities (AAA) 675 810 IPR003959 GO:0005524|GO:0016887
Pumo4g03405 1890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 551 IPR013083 -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 421 435 - -
Pumo4g03405 1890 Gene3D - 811 876 - -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 168 190 - -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 115 151 - -
Pumo4g03405 1890 FunFam ATPase family, AAA domain-containing 2 634 817 - -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 23 61 - -
Pumo4g03405 1890 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03405 Pumo-Chr4 71648554 71656280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03405 637 872 Calmodulin-binding Proteins AT3G56690 40.756 2.57e-44 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03405 - - gmx:100803849 3296.91