Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03399 ATGGATCAAATGACAGATTCGAAAATGGATCAACAGAGACAAGATTATCAACATTCTGAACCCTGTATCCTTACGAGAGAAACCACCAACATCTCGCAGCCTAATAATAACAATGCAATAGTGGGAGATTCTGGGAACACAACTAATGTTGATTCTCACTTTCCGCAAGATGCTTATGACAATGCTAGGGTGTATGGGGTTCCACAATATAATGGCATTCATCCTTCGCATAATCTTGATATGGGTGTACCAGTTGCAGCTAACTTATATTATTCTGGCATTAATCCCCCTTCTAGTACTGGTGTTTTCCATCCGCTTCTAAATCACAGAGCTTCTAATCAGTTGCCTGGTTCAAGCACATTTGAAGTTGCTAGAGGTTCTTCAGATAATTTTGGAAGAAGTTCTAATTTCATGGATGATGCTAGAGGTCCATACAAAAGGAAAATTCCTGAAGGGATAAGAGGAAATTCCCAATATTGTAATGCTTCATCTAGCTCTTCAATTGCTCCCCCTAATGCAAGACATGCTGATAGTGTTGCTATGATGGATACTACATCATTTCATATCCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAACAGGGCAGATGAGTCTCTTATGGTGCATGATCATAATAATTTGATCCATGGGAATTATTTAGGGCCACACTTTCAGCCAGTTCCTCCTCCATGGTTGTACCAACAGTTGAATAGTAACAATAATGATGGTTATACTACACCCTGGAATCAATATCTCCCGATGCCTTGTATACAAGCACCCGCTGTAAATGGAAGTTCATTAGAGAATGTAAGTATGGATTTGCAAAGATATCATGATCCAGTTGGAAACCAAAATGGCCTCAGGTTTCCTCATCATTTTCCTATCAACCAACAACACCATAATTATCATCACCCAACACAACCTATGCAAGGAGTAAGAGATCATAATATCAACTTTCACCCTGCAATAACTACAAATTCATTTAGAGCTCCAACAAATCCTTCGTGTAATGTTACAATCCCCACTCAAGCTGGTTTTGAGATGGGTCCTAGGCATGTTGGTCCTGCACCATCAGTTGGGCACCGGATTTACCGACCCCATAGAAGGGTCATGCCTGAGACAACTCTTAGACATCGAAGTGTTCCTCCTATGGGCTTCCTCCAAGTTGATGATGTTACTTTAATTAATGAAGTGGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGAGGATTGGCAATGTAAACACTGGTTTATCAGAGGAAACAATTACAACTAAATTGAAGACAAAAACTCATTTAACGCGTGCTACTAGTATTAATCTGGAGGAAGAAGCTTGTGATGATCAAGAAGCAGATTCTTGTATAATATGTCAGGATGAATTCAAGGATCAAGAGGAGATTGGAGTTCTTCAATGTGAGCATGAATATCATACAGATTGCTTAAGGAAATGGTTGGTGGTAAAAAATGCTTGCCCCATATGCAAATCAGAAGCTTTGACACTTGAAAGGAAGAATGATAGAAACCAATGA 1587 0.3995 MDQMTDSKMDQQRQDYQHSEPCILTRETTNISQPNNNNAIVGDSGNTTNVDSHFPQDAYDNARVYGVPQYNGIHPSHNLDMGVPVAANLYYSGINPPSSTGVFHPLLNHRASNQLPGSSTFEVARGSSDNFGRSSNFMDDARGPYKRKIPEGIRGNSQYCNASSSSSIAPPNARHADSVAMMDTTSFHIPSLVEVGPHGSAWNRADESLMVHDHNNLIHGNYLGPHFQPVPPPWLYQQLNSNNNDGYTTPWNQYLPMPCIQAPAVNGSSLENVSMDLQRYHDPVGNQNGLRFPHHFPINQQHHNYHHPTQPMQGVRDHNINFHPAITTNSFRAPTNPSCNVTIPTQAGFEMGPRHVGPAPSVGHRIYRPHRRVMPETTLRHRSVPPMGFLQVDDVTLINEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVNTGLSEETITTKLKTKTHLTRATSINLEEEACDDQEADSCIICQDEFKDQEEIGVLQCEHEYHTDCLRKWLVVKNACPICKSEALTLERKNDRNQ 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03399 528 SMART ring_2 473 513 IPR001841 -
Pumo4g03399 528 Pfam Ring finger domain 471 514 IPR001841 -
Pumo4g03399 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 113 518 IPR045191 GO:0061630
Pumo4g03399 528 SUPERFAMILY RING/U-box 472 518 - -
Pumo4g03399 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 518 IPR013083 -
Pumo4g03399 528 FunFam E3 ubiquitin ligase BIG BROTHER 433 518 - -
Pumo4g03399 528 ProSiteProfiles Zinc finger RING-type profile. 473 514 IPR001841 -
Pumo4g03399 528 CDD RING-H2_RNF24-like 471 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03399 Pumo-Chr4 71590098 71593924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03399 392 518 C3H Transcription Factor Family AT2G15530 46.094 2.99e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03399 K19041 - gmx:100800642 842.032