Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03396 ATGAGCATGCTAAAATTTGCATTAGGAAATAATGCAGCATCTGATGATGGCACGCATGTGATGATGGGCACAAACACAATAGGAGTTATTACAAACAACAACTCTCGCAACGGTAAAGAGGAGATAGTGGCAATTAAGATGGCACTGCAGGATTTCTATCATTATAGCAATCAAAGCTTTGCTCTTCAGATAAGGAACTCACATGGGGATCCCCTTCAGGCTGCCCTTGCAGCTAGAGATCTTATTGATACACAGCGAGTGGAAGCAATAATAGGACCCCAAACATGGGAAGAGACAACTATAGTGGCTGAGATTTGTAGCCAAAATATGACCCCAGTTCTATCTCTAGCTGATGCAACTCCAAACTGGTCAACTTTGAACTGGCCCTTCCTTGTGCAAGCCTCACCTAATCAGTTTAAGCAGATGAAAGCAGTAGCAGCTATTGTTCATTCCTTTGAATGGTATCATGTTAACATAATATATGATGATAGTGATTCTTCATCCACAAGAATGTTATCTCATCTCTATAGAGCTCTAAGCCAAGCAGGTGTGCAAATAAGCAATCTTTTGGCCATCCCTTTAATTTCCTCTTCATTGTCCCAAGAACTTGAGAAGCTTAGAGATGGCCATTGCAGAGTTTTTGTTGTTAATTTGTCCCTTCATTTGGCCATAAACCTGTTTGAAACTGCAAACAAATTGAACATGATGGAGAAAGGCTATGTGTGGATCATCACTGATCCTTTTACGAGTCTTGTCCATTCCTTGAAAGCATCCACTATATCCTCCATGCAAGGGATAATTGGAGTAAAGAGCTACTTCCCAGAAATAGGGGTTCAATATGAGGATTTCTACCTTAAATTTAGCCAAAAGTTTAGCTCAGAGAACCCTCATGAATTTAACAATGAGCCTGGGATATTTGCAGCACGTGCCTATGATGCTGCATGGACTCTAGCTCTAGCCATGAGTCAAACCAACAGTAAAGGGGGGCAAATTTTACTAAAAAAGATTCTGCTTAATAATTTTACTGGCTTGAGTGGAAAAATTCAGTTCACTGACCAAAAGTTGGATCCTTCAGATACTTTTCAGATCACCAATGTGATAGGGAAAGGTAGCGAGGAAATTGGATTCTGGTCAGATGGACTCGGTTTCTCAAATAATATTGGCCAAAATGCTACTTTCAATTCTTCAATGAAGGAACTAGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAACTCTAAGAGGATGGACCCTGCCAACAAAGGATAAGCCACTAAGAATTGGGGTCCCTGTTTTGGCCACATTGAAACAATTCATAAATGTAATTCAAGACAAAACTGAAAATACTAGCACCTACCAAGGATTCACTATTGATCTTTTTAGAGCAACTATGGAGTTGGTGCCCTATCATTTGCCATACAAATTCTACCCTTTCAATGACACATATGATAATTTGGTGAAGCAAGTTTATTTAAAGAACTTCGATGCAGTAATTGATGTGACAATAATTTCATATCGATATCAGTACGCAGAATTCACTCAGCCATACACTGATCCGGGAGTGGTGATGGTAGTCCCCCTTAAATCAAAAGTAGCACATAGAGCTTGGTTATTTACGAAACCTTTTACAAAGACTATGTGGGTTCTAATATTGGCCTTGATTATCTACAATGGCTTTATTCTGTGGATGTTGGAGAGACGCCACAGTCCTGAAATTAGAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGTTAGATGGGGACAAGTTACACAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCTACTATGGATGATATTGATCAGCTACGGAATAACAACATCAAGGTTGGATACGGTACAGGATCCTTTTTGAAAAATTATGTGCAGGAAGTGTTACAGTTCCACCCTGCAAACATGAAGCATTTTGGAGCACTTGAAGAGTATGCTGAAGCTCTCAGAAGGAAAGAAATAGGAGCTGCATTTCTTGAAGTTCCAGCAGCCAAAATTTTCCTTGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTATAAAATTGGAGGATTTGGATTTGCATTTCCAAGGGGGTCTCCATTTCTTCCAAGTATAAACAAAGCACTTCTGGGTTTATTTGAAACTGGCAAGTTACGTGAGTTGGAGAACCAAATGCTTGCATCAGAGCAATGTGAAGACATAGAACTAGATGGAGAAGCTGCAAGTCTTAGCCCCAACAGTTTCTGGGCCCTCTTCATATTGACAACAGGCACATCAACAATTGCTCTCTTGTTTTACGTTTTTTGCATGAATTATGCAAACAGTGAAGAGAAAACAATAAGAAGACTAACGAAGATGATCATTCAACAATGTGGCCATGCAAAGAGACTAATGTCAAGAAAAGTTGCAGAAAGTCCTATGACCTCTCCAACCATACATGCTACTCCAACTCAATCATGTTTGTTTGCTATTATGGACAGCATGCATATGTTTGTTCGTCTCCTTTGTTTTATGAGCATGCTAAAATTTGCATTAGGAAAAGCAACAGTTGTTGATGATGGAGCTGCTGGCATGCATGTGATGGGAACAATAGGAGTTATTACAAACAACAACTCTCGCAATGGTAAAGAGGAGATAGTGGCAATTAAGATGGCATTGGACGATTTCAATCATTATAGCAATCAAAGCTTTGCTCTTCAGATAAGCAACTCACATGGGGATCCCCTTCAGGCTGCCCTTGCAGCTAGAGATCTTATTGATAAACAGTACGTGGAAGCAATTATAGGACCCCAAACATGGGAAGAGACAACTTTAGTGGCTAAGATTTGTAGCCAAAATATGACCCCAGTTCTATCTCTAGCTGATGCAACTCCAAACTGGTCAACTTTGAAGTGGCCCTTCCTTTTTCAAACCTCACCTAATCAGTTTAAGCAGATGAAAGCAGTAGCAGCTATTGTTCATTCCTTTGAATGGTACAATGTTAACATAATATATGATGATAGGGATTCTTCATCCACAAGGATGTTATCTCATCTCTATAAAGCTCTACGCAAAGCAGGTATACACATAAGCAACCTTTTGGCCATCCCTCCTTTAATTTCATTGTCCCAAGAACTTAGGAATAGAGATAGATTATATGCATCCACGTGTAATTTCCTGAACATAATGCTTGTTGCTAATTTTGCTCACCTAAGGAAATAG 3306 0.3999 MSMLKFALGNNAASDDGTHVMMGTNTIGVITNNNSRNGKEEIVAIKMALQDFYHYSNQSFALQIRNSHGDPLQAALAARDLIDTQRVEAIIGPQTWEETTIVAEICSQNMTPVLSLADATPNWSTLNWPFLVQASPNQFKQMKAVAAIVHSFEWYHVNIIYDDSDSSSTRMLSHLYRALSQAGVQISNLLAIPLISSSLSQELEKLRDGHCRVFVVNLSLHLAINLFETANKLNMMEKGYVWIITDPFTSLVHSLKASTISSMQGIIGVKSYFPEIGVQYEDFYLKFSQKFSSENPHEFNNEPGIFAARAYDAAWTLALAMSQTNSKGGQILLKKILLNNFTGLSGKIQFTDQKLDPSDTFQITNVIGKGSEEIGFWSDGLGFSNNIGQNATFNSSMKELGQVLWPGRPWGTLRGWTLPTKDKPLRIGVPVLATLKQFINVIQDKTENTSTYQGFTIDLFRATMELVPYHLPYKFYPFNDTYDNLVKQVYLKNFDAVIDVTIISYRYQYAEFTQPYTDPGVVMVVPLKSKVAHRAWLFTKPFTKTMWVLILALIIYNGFILWMLERRHSPEIRGSMLNQTGTMAWLALTPLIKLDGDKLHSNLSKMVMVVWLFVALIITQTYTANLASMLTAERLEPTMDDIDQLRNNNIKVGYGTGSFLKNYVQEVLQFHPANMKHFGALEEYAEALRRKEIGAAFLEVPAAKIFLAKYCKEFIQAGPLYKIGGFGFAFPRGSPFLPSINKALLGLFETGKLRELENQMLASEQCEDIELDGEAASLSPNSFWALFILTTGTSTIALLFYVFCMNYANSEEKTIRRLTKMIIQQCGHAKRLMSRKVAESPMTSPTIHATPTQSCLFAIMDSMHMFVRLLCFMSMLKFALGKATVVDDGAAGMHVMGTIGVITNNNSRNGKEEIVAIKMALDDFNHYSNQSFALQISNSHGDPLQAALAARDLIDKQYVEAIIGPQTWEETTLVAKICSQNMTPVLSLADATPNWSTLKWPFLFQTSPNQFKQMKAVAAIVHSFEWYNVNIIYDDRDSSSTRMLSHLYKALRKAGIHISNLLAIPPLISLSQELRNRDRLYASTCNFLNIMLVANFAHLRK 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03396 1101 SUPERFAMILY Periplasmic binding protein-like I 898 1066 IPR028082 -
Pumo4g03396 1101 Gene3D - 32 359 - -
Pumo4g03396 1101 Gene3D - 895 1063 - -
Pumo4g03396 1101 Gene3D - 534 674 - -
Pumo4g03396 1101 Gene3D - 137 378 - -
Pumo4g03396 1101 CDD PBP1_GABAb_receptor_plant 27 387 IPR044440 -
Pumo4g03396 1101 FunFam Glutamate receptor 535 673 - -
Pumo4g03396 1101 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 810 IPR015683 -
Pumo4g03396 1101 FunFam Glutamate receptor 141 301 - -
Pumo4g03396 1101 Pfam Receptor family ligand binding region 916 1066 IPR001828 -
Pumo4g03396 1101 Pfam Receptor family ligand binding region 44 367 IPR001828 -
Pumo4g03396 1101 FunFam Glutamate receptor 420 534 - -
Pumo4g03396 1101 Pfam Bacterial extracellular solute-binding proteins, family 3 449 759 IPR001638 -
Pumo4g03396 1101 SMART GluR_14 426 763 IPR001320 GO:0015276|GO:0016020
Pumo4g03396 1101 Pfam Ligand-gated ion channel 760 792 IPR001320 GO:0015276|GO:0016020
Pumo4g03396 1101 SUPERFAMILY Periplasmic binding protein-like I 26 378 IPR028082 -
Pumo4g03396 1101 Gene3D - 422 533 - -
Pumo4g03396 1101 SUPERFAMILY Periplasmic binding protein-like II 402 758 - -
Pumo4g03396 1101 CDD GluR_Plant 423 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03396 Pumo-Chr4 71527471 71540876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03396 3 856 Ion Channels AT2G29110 32.481 1.14e-143 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03396 - - gmx:100799573 1347.41