Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03394 ATGGCAAAAACGAGGCCAGGCAGAAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACGTGGCGCGCGTGGAGAAGATCGAACAGGATAGTAGGAACAACGTGAAGGTGCGTGTGAGGTGGTATTATAGGCCTGAAGAGTCTATTGGAGGACGCAGGCAGTTCCATGGAGCAAAGGAGCTGTTTTTGTCTGACCATTATGATGTTCAGAGTGCTCACACCATTGAAGGGAAGTGTGTTGTGCACTCTTTTAAGAACTATACCAAGCTTGAGAATGTAGGTGCTGAGGATTACTATTGTAGGTTTGAGTACAAGGCTGCTACCGGGGCTTTCACGCCTGACCGTGTTGCTGTGTATTGCAAGTGCGAGATGCCTTACAACCCGGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGACCATTTTGTTTGTTCAGAATGTTCATCTGATGATGACATGAAGAAACCCCAGGCTACATTTCCTGTATCACCAGGATCTGATATCAAGGTGAGACTACCTGCATCCAGTCCTAAACAATTTGAGTTGAGATGCACTTTCACTTATGTTCCTTTTCAGTTTCCCTGCTCATGCTGGAGAGGCATTATTATCCCTAGGCTACAGGGGGAGCGGGAACACATTTGCTGTAGTATTTGA 771 0.4786 MAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDSRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFPVSPGSDIKVRLPASSPKQFELRCTFTYVPFQFPCSCWRGIIIPRLQGEREHICCSI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03394 256 FunFam Chromatin remodeling protein EBS 1 132 - -
Pumo4g03394 256 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Pumo4g03394 256 SMART BAH_4 21 136 IPR001025 GO:0003682
Pumo4g03394 256 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Pumo4g03394 256 Pfam BAH domain 23 135 IPR001025 GO:0003682
Pumo4g03394 256 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Pumo4g03394 256 SMART PHD_3 140 187 IPR001965 -
Pumo4g03394 256 PANTHER OS08G0421900 PROTEIN 1 208 - -
Pumo4g03394 256 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Pumo4g03394 256 CDD BAH_BAHCC1 22 156 - -
Pumo4g03394 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 199 IPR013083 -
Pumo4g03394 256 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Pumo4g03394 256 Gene3D - 2 132 IPR043151 -
Pumo4g03394 256 Pfam PHD-finger 140 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03394 Pumo-Chr4 71464906 71468908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03394 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 7.13e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo4g03394 BAH 4.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03394 K25868 - gmx:100800993 441.039