Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03390 ATGGTGAGAGGAGGAGGAGGAGGAGGGGAGATAGTGGAAGTTGAAGGGGGTCACATTGTGCGGTCCACAGGGCGGAAGGACCGTCACAGCAAAGTGTGCACCGCCAAAGGCCCGCGTGACCGACGAGTCAGACTGTCGGCCCACACCGCGATCCAATTCTACGACGTCCAGGACCGCTTGGGCTACGACCGGCCCAGTAAGGCCGTTGACTGGCTCATCAACAAGGCCAAGTCCGCCATCGACCAACTCGCCCACCTCCCTCCCTGGAAACCCACTCTCTCCAACACAACTCAGAACGACGACGAATCAGACAAACCAAACCCTAACCCCAACCCCAACCCCGATGCTGAAATTCTCAACCATTTCAACGAGGACGACAACCAGAACCTTCGTCACGATGGTGGTGGAGGTTCCAGTTATCTTCCGTTGGATAACGACGCGATAAGGTCCTTCTTCCCCACAACGACGTCGTCGTTGGTTCAGTTCCATAGTTACCCACCGGATTTGCTTTCCAGAACGAGCAGCCAGGACCTGCGTCTCTCGCTTCAGTCATTGCAAGACCCGATTTTGCTTCACCAGAATCAAAACGAGCACGTGCTTTTCGCTGGAACTGGTTTTGATAACAACATGCTAGCGTGGAATAATAATAATAATAATAATAGTGATACTTATGGTGGAGGTGGAGGTGGAGGCGGAGGGTTTGTGTTTAACGCTCCTTCGACTTTGCCGGGGCCGGCGACGGTGGCGTCGCCGGCGGTGGTGTTTGGCCATGGTCATGGTCAAGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAACCCTTCCGTTCGTGCGTGGATTGACGCGCCGTCGTTCGTCGCCGCCGCCGATCATCATCATCATCATCGGCATCATCACTACCTGTCTCCAGCGGCGGCGGCGGCGTTGGTGTATCAGTCTTCTCCTTCCACGGCGGCATTTGCGGCGCCCGGGGGCTTCTCGGGATTCCGCGTGCCGGCACGAATTCAGGGTGAGGAGGAGCACGACGGCGTGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCGTTGA 1083 0.566 MVRGGGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDQLAHLPPWKPTLSNTTQNDDESDKPNPNPNPNPDAEILNHFNEDDNQNLRHDGGGGSSYLPLDNDAIRSFFPTTTSSLVQFHSYPPDLLSRTSSQDLRLSLQSLQDPILLHQNQNEHVLFAGTGFDNNMLAWNNNNNNNSDTYGGGGGGGGGFVFNAPSTLPGPATVASPAVVFGHGHGQGQYFSQRGPLQSSNNPSVRAWIDAPSFVAAADHHHHHRHHHYLSPAAAAALVYQSSPSTAAFAAPGGFSGFRVPARIQGEEEHDGVSDKPSSASSDSRR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03390 360 ProSiteProfiles TCP domain profile. 25 83 IPR017887 -
Pumo4g03390 360 MobiDBLite consensus disorder prediction 19 40 - -
Pumo4g03390 360 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 273 IPR005333 GO:0003700
Pumo4g03390 360 MobiDBLite consensus disorder prediction 333 360 - -
Pumo4g03390 360 MobiDBLite consensus disorder prediction 87 120 - -
Pumo4g03390 360 MobiDBLite consensus disorder prediction 89 106 - -
Pumo4g03390 360 MobiDBLite consensus disorder prediction 337 360 - -
Pumo4g03390 360 Pfam TCP family transcription factor 24 103 IPR017887 -
Pumo4g03390 360 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03390 Pumo-Chr4 71407314 71408998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03390 5 359 TCP Transcription Factor Family AT1G53230 45.526 4.23e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo4g03390 TCP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03390 - - gmx:100802063 491.886