Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03388 ATGATTAGCAATGGAGTGTGCAGTCTCCGCACGTGCCTCCGTTTCCCGGAGAGACCCCTATTCCGAGCACCTCCGAGCTCGTTCAGCTGCCGGCGGCGGTTTCTGGTGACTGCGTCCGAAACAAAGAAGAAAGAGAAGGTGATTGTGATTTCTGGACCCACCGGTTCCGGCAAGAGCCGCCTCGCATTGGAACTCGCGAAGCGCCTCAACGGCGAAATCGTCAGTGCCGACTCCGTCCAGGTGTATCGGGGTCTTGATGTTGGATCTGCAAAGCCTTCTCCAAATGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGAGAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCCTCTCCAGAGATTACATCTGAAGCAGATCAAGAGTTAGCTGAACTACAGAGGAATGAAGACTGGGATACAGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCAAAGGCTCAATTTCTGGCAGTGAATGATTGGTACCGATTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCGAGTACCATATAATTCCTTCAGGGAACAGGGTGAAAATAGTGTTGCTGATGGTTCTGGGTCGTCTGATATGGACACTTATGGTGATGCAATGGAAGGAACCAACTCATCACAGTTAGACTACGAGTTTATGTGCTTTTTCCTTTCTAGCCATAGACTTGACCTCTATAAATCAATTGATTATCGGTGTGAAGATATGCTATTAGGAAGGGATGGGATTTTGTCTGAGGCTCAGTGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCAACAAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGCCAGAGTTCTGTTGGAGAATTTTACAAATTCTTGTTTGAGTTTCAAAAAGCATCACGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGTAATGAAAATATATACCAGTGGCTTGATGCTTCTAAACCTCTGGAAACCATTCTCAACTTCATTCATGGCGCATACCATGATCGGAATGGAAGTATACTTGTGCCTGAACACCTAAGAATGTCGAGAGATATTTCTAATCACCGAGAAGCTACACAACTTAAGTCTTACCGCACCAAAAATAGGCATTTTGTGAACGGGGAGGATTGTTCTCCTATTCTGAACTGGATAAGGAAGACTCAAAGGTGA 1347 0.4514 MISNGVCSLRTCLRFPERPLFRAPPSSFSCRRRFLVTASETKKKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPNERKEVPHHLVDILHPSEDYSVGQFFEDARQATRCILENGRVPIVVGGTGLYLRWFIYGKPDVPKASPEITSEADQELAELQRNEDWDTAVQLVVKAGDPKAQFLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYNSFREQGENSVADGSGSSDMDTYGDAMEGTNSSQLDYEFMCFFLSSHRLDLYKSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSVGEFYKFLFEFQKASRNFAKRQLTWFRNENIYQWLDASKPLETILNFIHGAYHDRNGSILVPEHLRMSRDISNHREATQLKSYRTKNRHFVNGEDCSPILNWIRKTQR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03388 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 176 IPR027417 -
Pumo4g03388 448 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
Pumo4g03388 448 Gene3D - 155 226 - -
Pumo4g03388 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 374 IPR039657 -
Pumo4g03388 448 Pfam IPP transferase 80 369 - -
Pumo4g03388 448 Gene3D - 44 433 IPR027417 -
Pumo4g03388 448 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Pumo4g03388 448 Hamap tRNA dimethylallyltransferase [miaA]. 47 386 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03388 Pumo-Chr4 71328024 71334657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03388 50 330 C2H2 Transcription Factor Family AT2G27760 25.260 7.17e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03388 K00791 - gmx:100808814 849.736