Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03386 ATGAAGGATTTGTTAACGACAGGCATGCATATGAGCAGCAATGCCCTTGCCATTGTAACAGAATTAGCTGACAGTGTTAACGATTGGAATGTCACAAACTTACTTGGGCGCCGCCTCCTTCAAGATTCTAAGCTTCCCTCATGGGTTGATCAACATAGACTCCTTAATGCAAATGTTAGTCCATTCAAACACAAGCCTAATGTTACTATAGCTATAGATGGTAGCGGAGATTCCAAAAGCATAAACGAGGCATTGAATCAAGTGCCTGAGAAAAATCGAAAGCCATTTGTGATCTACATCAAAGAGGGTGTTTACCAAGAGTACGTTGAAGTTACAAAGGAAATGACCCATGTGGTGTTTATTGGTGAAGGTGGAAAAAAGACACGAATAACTAGCAACAAAAACTTCATAGATGGAATTAACACTTACAGAACTGCCACTGTTGGAGATCACTTTGTGGCCATCAATATGGGGTTTGAGAACTCTGCTGGACCTCAAAAGCATCAAGTAGTGGCATTGAGAGTCCAAGCAGACAAGTCCATCTTCTACAATTGCTCAATGGATGGGTATCAGGATACATTGTATGTACACACCATGCGTCAATTCTATAGGGATTGCACCATTTCAAGTACCATTGACTTTTTGTTTGGTAATGCACTTGCTGTTTTCCAAAATTGCACTTTCGTGGTCCGAAGGCCACTGGAGAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAAGGACAACAACCATCAGGAATAGTAATCCAAGGGGGATCCATTGTGTCTGACCCTAAGTTCTACTCAGTGAGATTTGAGAACAAGGCTTACCTAGCTCGTCCATGGAAGAATTACTCTAGGACCATCATCATGGACACTTACATTGATGATTTGATTCAAGCTGATGGGTATTTGCCATGGCAAGGACTAGAGAGCCCTTCTGGTATGGATACTTGCTTCTATGCCGAGTACCACAACACTGGCCCCGGTTCAGACAAGTCTAAGCGTGCGTATTGGGCTGGGATTTGGAACCTCAATTCAAAAGCTGCATATTGGTTCTCACCATCCAAGTTCTTTCATGGAACTGACTGGATTGAGGTTACTGGAATTCCTTGCTTCCCTAATGTGCCCACACACCATAGGCACAAAAAGACAATTCTCAATTGGCAATAA 1176 0.4252 MKDLLTTGMHMSSNALAIVTELADSVNDWNVTNLLGRRLLQDSKLPSWVDQHRLLNANVSPFKHKPNVTIAIDGSGDSKSINEALNQVPEKNRKPFVIYIKEGVYQEYVEVTKEMTHVVFIGEGGKKTRITSNKNFIDGINTYRTATVGDHFVAINMGFENSAGPQKHQVVALRVQADKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISSTIDFLFGNALAVFQNCTFVVRRPLENQQCIVTAQGRKEGQQPSGIVIQGGSIVSDPKFYSVRFENKAYLARPWKNYSRTIIMDTYIDDLIQADGYLPWQGLESPSGMDTCFYAEYHNTGPGSDKSKRAYWAGIWNLNSKAAYWFSPSKFFHGTDWIEVTGIPCFPNVPTHHRHKKTILNWQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03386 391 PANTHER PECTINESTERASE 5 367 - -
Pumo4g03386 391 FunFam Pectinesterase 62 377 - -
Pumo4g03386 391 Pfam Pectinesterase 67 362 IPR000070 GO:0030599|GO:0042545
Pumo4g03386 391 Gene3D - 65 377 IPR012334 -
Pumo4g03386 391 ProSitePatterns Pectinesterase signature 1. 92 111 IPR018040 -
Pumo4g03386 391 SUPERFAMILY Pectin lyase-like 65 373 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03386 Pumo-Chr4 71315989 71317642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03386 1 372 Carbohydrate Esterase AT3G05610 52.520 1.19e-140 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03386 K01051 - gmx:100820556 746.117