Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03385 ATGGGGTCACCATTCAAGCCCATCTCGTGCACCAGAAAAACTCCATACATAATAGAAACCAAGAACTTGTCATACAAGTTGTGCAGCCAGCTTGATGAGTATAGAAGTCTTTGTTTTGGTTCCAATCCAGGGAGAGGTGCCAAGTTCATTTTGAAGGATGTGAATTGTGAGGCAAGGCCAGGGGAGCTTACTGCTATTGCTGGCCCTAGTGGAGCTGGAAAAACCACACTGCTTGAGATTCTTGCTGGGAGAATACCCTCGTGTAAAGTGTCTGGCCAAGTTCTTGTCAATCATAGGCCTATGGATGTGAAGCAATTTAGAAGAACATCAGGGTATGTGACACAAGATGATGCTTTGTTCCCATCATTGACAGTTAGAGAGACACTCATGTATAGTGCCATGCTGAGGCTTCCTGGGGGGAGAAAAGTGGCTGCCATCAGAGTTGAAGAGTTGATGAAGGAGCTTGGATTGGACCACATTGCAGATTCAAGAATTGGAGGTGGATCAGACCACGGCATATCCGGCGGTGAAAGGCGTAGAGTTTCCATTGGCGTGGACTTGGTTCATGACCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGGTTGGATTCAGCATCAGCTCTTGGTGTAGTCTCATTGCTTAGACTTGTGGCATTTAACCAAGGTAAGACAATTATCTTAACCATCCACCAACCTGGTTTCCGAATCTTGGAGCTATTTGATGGCCTCATTTTGCTGTCTGATGGATTTGTGATGCATAATGGATCATTGAATCTTCTTGAGGCTAGGCTCAAGTTAGCTGGGCACCACATTCCTGACCATGTCAATGTACTCGAGTTTGCTCTTGATGTCATGGAAAGCTTGGTTATACATACTTCAGTATCTGAGGACAACCAGTTTCTGCTAAAAGAGAACCAAGATCACAAAATGAGGATGCAGTACTCTAAGGTTGTCAAAGAAAAGGCACTTATGTACTCAAATTCTCCAATGGAGGAGATTTCAATCCTGGGACAAAGATTTTGCTGCAACATATTCAGAACCAAGCAACTCTTTGTCACCAGGGTCATACAAGCCTTAGTAGCTGGTTTTATACTGGGGAGCATATTTTTCAATGTTGGCAGTCAACAAAGTCATGTAGCATTGCAAACTAGAAGTGGCTTCTTTGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACTGAAGGATTGCCTATTTTCTTGGAGGAGAGAAGAACTTTGATGAGAGAGACCTCAAGAGGAGCTTATAGAGTTTCTTCCTATGTTTTAGCAAATACCCTTGTGTTCCTTCCTTTCCTTCTATTGGTTGGTCTTCTGTACTCTACTCCAGTTTATTGGCTTGTAGGATTAAGGAAAGACATTGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCCTACTCATGTCGAACTCTCTTGTGGCTTGTTTCAGCGCTCTAGTGCCAAATTTCATCCTGGGAACCTCGGTGATTGCAGGTCTAATGGGGTCCTTCTTTCTATTCTCAGGGTATTTCATATCTGAGGAGAAAATACCAAGTTATTGGATTTTTATGCACTATTTGAGTCTATTCAAGTATCCATTTGAGTGCCTTGTGATAAATGAGTATGGGGGAGAGCAAGGGAAAACGAGATGCTTAGAAATTAGCAATGGAAAATGCGTACTATATGGAGTTGAATTCTTAAGACAACAGGGTCTGAGAGATTCACCAAAATGGACCAATTTGGCTGTAATGTTGTGCTTCATAGTGGGGTATAGAGTGCTTAGCTTTTTTATTCTTTGGTTCAGATGTTACAGAACCAGAAAATAG 1833 0.4233 MGSPFKPISCTRKTPYIIETKNLSYKLCSQLDEYRSLCFGSNPGRGAKFILKDVNCEARPGELTAIAGPSGAGKTTLLEILAGRIPSCKVSGQVLVNHRPMDVKQFRRTSGYVTQDDALFPSLTVRETLMYSAMLRLPGGRKVAAIRVEELMKELGLDHIADSRIGGGSDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALGVVSLLRLVAFNQGKTIILTIHQPGFRILELFDGLILLSDGFVMHNGSLNLLEARLKLAGHHIPDHVNVLEFALDVMESLVIHTSVSEDNQFLLKENQDHKMRMQYSKVVKEKALMYSNSPMEEISILGQRFCCNIFRTKQLFVTRVIQALVAGFILGSIFFNVGSQQSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTLMRETSRGAYRVSSYVLANTLVFLPFLLLVGLLYSTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGTSVIAGLMGSFFLFSGYFISEEKIPSYWIFMHYLSLFKYPFECLVINEYGGEQGKTRCLEISNGKCVLYGVEFLRQQGLRDSPKWTNLAVMLCFIVGYRVLSFFILWFRCYRTRK 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03385 610 Gene3D - 11 275 IPR027417 -
Pumo4g03385 610 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 274 IPR003439 GO:0005524
Pumo4g03385 610 SMART AAA_5 60 251 IPR003593 GO:0016887
Pumo4g03385 610 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 595 - -
Pumo4g03385 610 FunFam ABC transporter G family member 10 35 280 - -
Pumo4g03385 610 Pfam ABC-2 type transporter 231 296 IPR043926 GO:0140359
Pumo4g03385 610 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Pumo4g03385 610 CDD ABCG_EPDR 41 256 - -
Pumo4g03385 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 266 IPR027417 -
Pumo4g03385 610 Pfam ABC-2 type transporter 333 544 IPR013525 GO:0016020|GO:0140359
Pumo4g03385 610 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03385 Pumo-Chr4 71310077 71311909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03385 31 261 Calmodulin-binding Proteins AT2G36910 27.572 2.87e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03385 K05681 - gmx:100776372 1139.79