Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03380 ATGTCGCATTCGTCGGGGAAGCCGGTTTCCGAGGTGGTCGGCATAGACGCCACCTTCGCCGATCGGTTCCGCGACGCTCTCACCTGCGACGACAACAACATTAACAAGCCCGACTTCCGGGAACTCGATCTGGGCTCCCCGGTCTCCCCATTGCGGACCACGCGCGGCCCAGCCGCCAGCACCAGCTCCAGCTCCTCCGGCTCCTTCTCGGGCCGAACCGGGCCCAACACCGCCACCCGAAAGCCCGAATCGGCCCAAAATAATAATCACAACCACAACACTCACACTCACAGCAACAACAACAACAACAACAACTCTGGTGAGCTTTCTGGTTCGAGTGAGAACAGCCCCACCGCGCGTGGGTTCAAACCGGGTCACGCGAGATCCGACTCCGGATCCGCGCCGGCGCCGTTGATATACTCCGGCCAGACGGCGACTTCGCCGGCGATGAATGTTCTTCCCACCGGAAACATTTGTCCCTCCGGGAAGATCTTGAAGACGGGGATGGCGCCGAATCGGAGCAGTAGGAGTAGTAGAAGCGATGTTTTGGGGTCTGGAATGGGGAACTACGGCCACGGGAGCATAATGCGCGGAGGCGGGAAGGCGGAGCCGGTGAGTTCTCGCGGCGGCGGTGAGACGGTGAAGAGAGGGGGCCACCACGTGCAGGGTGTGGATCCGGAAGAGTTGAAGAGGTTGGGGAATGAGTGTTACAAAAGGGGGCATTTTGCTGATGCTTTGAGTCTCTATGATCGCGCGATTGCGATGTCGCCGGCGAGTGTCGCTTACCGGAGTAACCGTGCGGCGGCGCTGACGGGGCTGGGACGGTTGGGTGAGGCTGTGAGGGAGTGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGAAGGGCTCATCAGCGTTTGGCTTCTCTTTTCTTCAGGTTGGGACAAGTTGAGAATGCTAGGAAGCACCTTTGTTATCCTGGGATGCAGCCAGATCCGTCTGAGATGCAGAGGTTGCAAGTGATGGAAAAGCATATCAGCAAATGTGGGGATGTACGGAGAGTAGGGGATTGGAAGAGTGTTCTCAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCGGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCAGAATCGATTTTGTTGCATATTCCCAAATCGGAGCCGCACACTAATTCCTCTTCTCAGGCAAGGTTTTTTGGGATGCTTTCTGAGGCTTATTCGTATTTTGTCAGATCTCAGATTGAGTTGGCATTGGGAAGGTTCGAGAATGCGGTTACAGCTGCTGAGAAAGCCAGTCAGATTGATCCCAGGAATGTTGAAGTTGCTGTTTTACTCAACAATGTGAGGATGGTGGCAAGGGCTCGAGTGCGCGGCAATGATCTTTTTAAATCTGAAAGGTACACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGACTGGACCCTTCAAATTCTGTTCTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTCCAATCATGCTTTACATATCCAACCAAATTACACCAAGGCCCTTCTTCGAAGGGCAGCATCAAACAGCAAGCTAGAAAGGTGGGAGGAAGCAGTCAAAGATTATGAGGTCTTGCGGAGAGAACTTCCAAATGACAATGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTAAAGAAATCACGTGGGGAAGAAGTATATAATTTAAAATTTGGCGGTGAAGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTATCTGTTGTCCATTTTGAAGTTGCATCTAACTCACAATGCAAACAAGTATCGCCATTTGTCGATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAACAAAGCCCAACAGTTGCAACTGCAGAGAATGTTAGGATTGTACCAACCTTCAAGATATACAAAAATGGCAGCCGGGTGAAGGAAATTGTATGCCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2097 0.5103 MSHSSGKPVSEVVGIDATFADRFRDALTCDDNNINKPDFRELDLGSPVSPLRTTRGPAASTSSSSSGSFSGRTGPNTATRKPESAQNNNHNHNTHTHSNNNNNNNSGELSGSSENSPTARGFKPGHARSDSGSAPAPLIYSGQTATSPAMNVLPTGNICPSGKILKTGMAPNRSSRSSRSDVLGSGMGNYGHGSIMRGGGKAEPVSSRGGGETVKRGGHHVQGVDPEELKRLGNECYKRGHFADALSLYDRAIAMSPASVAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHQRLASLFFRLGQVENARKHLCYPGMQPDPSEMQRLQVMEKHISKCGDVRRVGDWKSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAESILLHIPKSEPHTNSSSQARFFGMLSEAYSYFVRSQIELALGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNHALHIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASNSQCKQVSPFVDTLCGRYPSINFLKVDIQQSPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03380 698 Gene3D Glutaredoxin 591 697 - -
Pumo4g03380 698 MobiDBLite consensus disorder prediction 30 142 - -
Pumo4g03380 698 SUPERFAMILY TPR-like 226 454 IPR011990 GO:0005515
Pumo4g03380 698 MobiDBLite consensus disorder prediction 166 227 - -
Pumo4g03380 698 MobiDBLite consensus disorder prediction 213 227 - -
Pumo4g03380 698 ProSiteProfiles TPR repeat profile. 418 451 IPR019734 GO:0005515
Pumo4g03380 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 31 695 IPR044534 -
Pumo4g03380 698 Pfam Thioredoxin 604 689 IPR013766 -
Pumo4g03380 698 Pfam Tetratricopeptide repeat 232 292 - -
Pumo4g03380 698 CDD TRX_family 603 690 - -
Pumo4g03380 698 SMART tpr_5 370 403 IPR019734 GO:0005515
Pumo4g03380 698 SMART tpr_5 464 497 IPR019734 GO:0005515
Pumo4g03380 698 SMART tpr_5 226 259 IPR019734 GO:0005515
Pumo4g03380 698 SMART tpr_5 498 531 IPR019734 GO:0005515
Pumo4g03380 698 SMART tpr_5 418 451 IPR019734 GO:0005515
Pumo4g03380 698 SMART tpr_5 532 565 IPR019734 GO:0005515
Pumo4g03380 698 SMART tpr_5 260 293 IPR019734 GO:0005515
Pumo4g03380 698 MobiDBLite consensus disorder prediction 168 184 - -
Pumo4g03380 698 Pfam Tetratricopeptide repeat 419 451 IPR019734 GO:0005515
Pumo4g03380 698 Gene3D Tetratricopeptide repeat domain 224 584 IPR011990 GO:0005515
Pumo4g03380 698 MobiDBLite consensus disorder prediction 53 119 - -
Pumo4g03380 698 ProSiteProfiles TPR repeat profile. 226 259 IPR019734 GO:0005515
Pumo4g03380 698 SUPERFAMILY Thioredoxin-like 501 696 IPR036249 -
Pumo4g03380 698 FunFam TPR repeat-containing thioredoxin TTL4 590 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03380 Pumo-Chr4 71247762 71252932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03380 463 608 U-box Gene Family AT3G07370 27.869 2.49e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03380 - - gmx:100795358 1212.98