Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03357 ATGTCGCTGAGGAAGGTCTTCCGCTCCCGCAAGTTCTCCAGATCGTTCAAGGAGGTGCTGGCGGCGCCGGCCGCCGCCGCCGCCGGAGAGGGCGGGGTCGCCGGCGCCGGCGAGGACGCGGCGAATGGGAATGGGTGGTCCAACATGCTGCCGGAGATCCTCGGTGAGATCGTGCGGCGCGTGGACACCGCGGAGGAACAGTGGCCAAACCGCCAAAACGTCGTCGCTTGCGCGTGCGTCTGCAAGCGCTGGCGTGACATCACGCGCGAGGTCGTGCGTGAACCTTCCCACACCGGGAAAATCACTTTCCCTTCGTGCCTTAAACAGCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACGTTTTATCTATATCTTGCCCTTACACCATCTTTCACAGATAAAGGGAAGTTTCTGCTAGCCGCCAGGAGATATAGGTGTGGTACCCATACCGAGTATATAATTTCACTTGATGCTGATGACCTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAGGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGCCGTCGGTTCACCAGCAAGCAGATAAGCCCACAAGTACCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGAATGGTTTGCTCACTGAAGTGTCCCGTGACTCCTGTCTCACCAACGGGTGAAGGTTCAGATAGCACGCCTGCCGATGGCCATAAGATGCACGACAAAGAACAAGTTGCATCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGGTGGCATGAGCATTTGCAATGCTGGTGCTTGAATTTCCATGGCCGCGTGACCGTGGCCTCGGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTCCTGCAGTTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGACAGCCCTTATCTGCTTTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 1137 0.5295 MSLRKVFRSRKFSRSFKEVLAAPAAAAAGEGGVAGAGEDAANGNGWSNMLPEILGEIVRRVDTAEEQWPNRQNVVACACVCKRWRDITREVVREPSHTGKITFPSCLKQPGPRDVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLGSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFTSKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVTPVSPTGEGSDSTPADGHKMHDKEQVASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03357 378 MobiDBLite consensus disorder prediction 196 216 - -
Pumo4g03357 378 SUPERFAMILY Tubby C-terminal domain-like 95 378 IPR025659 -
Pumo4g03357 378 SUPERFAMILY F-box domain 41 89 IPR036047 GO:0005515
Pumo4g03357 378 ProSitePatterns Tub family signature 1. 306 319 IPR018066 -
Pumo4g03357 378 Gene3D Tubby Protein; Chain A 102 378 IPR025659 -
Pumo4g03357 378 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Pumo4g03357 378 PRINTS Tubby superfamily signature 161 177 IPR000007 -
Pumo4g03357 378 PRINTS Tubby superfamily signature 288 305 IPR000007 -
Pumo4g03357 378 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Pumo4g03357 378 PRINTS Tubby superfamily signature 335 354 IPR000007 -
Pumo4g03357 378 PRINTS Tubby superfamily signature 177 201 IPR000007 -
Pumo4g03357 378 PRINTS Tubby superfamily signature 356 378 IPR000007 -
Pumo4g03357 378 Pfam F-box domain 46 91 IPR001810 GO:0005515
Pumo4g03357 378 PANTHER TUBBY-RELATED 43 376 - -
Pumo4g03357 378 ProSitePatterns Tub family signature 2. 363 378 IPR018066 -
Pumo4g03357 378 Pfam Tub family 107 373 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03357 Pumo-Chr4 70970402 70975455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03357 1 378 TUB Transcription Factor Family AT1G53320 72.703 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo4g03357 Tub 4.8e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03357 K19600 - gmx:100808096 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03357 4 70970402 70975455 Pumo4g03357 4 70970402 70975455 ECH