Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03355 ATGAAGAGGAACAGTTTGATGAAAGACTACACTCACAGTTGTGCCAACAAGAACCCAACAAAAGAGTCCATCCATGTTGTGAACTGCTACAACAACAACAAGAACCAAATGGCAAAAGAGTTTTGGGAGTGCAGCAACAACTCTCACAGTCACAGCAATGCAGATCAGGACTATGTGAATGGCTTCCCATGGCCACCAAGATCATACACTTGTAGCTTCTGCAGAAAGGAGTTCAAGTCTGCTCAGGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCAAATGAAGGTCACGCCCCTATGCTGAACCTTAACCTTGACCCTAACACTAACCCTAACAACAACTCAACCTCATCTAGTTTGTCCTTGTTACCATCATCTTCATCTTCAGCAACTGCTCTTAAGCCTGTCACTTGCACATTACCCTTGTTTGTTTCCCCCACTCCTCCTTCACCTTCTTCTGAGTTGAAGAGATGGGTTGTTGTGGATGGCATTCTGTTGAACCCTTTGAGCACAAAAACCCCAGAGAGCTCTAAGTCAAAGATTCCAGAATCTTTATCAGCTGGGGTTGGAGAATATGATCATCATGCTAATTTTGCAAGGGAAGGTGAGTGCAAAATGTTGAAGAAAGGTGAGATTCTCAGGATGGACTTGGAGATAGGTTTACCTAGAAATTATGATTTAGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG 747 0.4404 MKRNSLMKDYTHSCANKNPTKESIHVVNCYNNNKNQMAKEFWECSNNSHSHSNADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPNEGHAPMLNLNLDPNTNPNNNSTSSSLSLLPSSSSSATALKPVTCTLPLFVSPTPPSPSSELKRWVVVDGILLNPLSTKTPESSKSKIPESLSAGVGEYDHHANFAREGECKMLKKGEILRMDLEIGLPRNYDLDLELRLGTTYS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03355 248 MobiDBLite consensus disorder prediction 99 136 - -
Pumo4g03355 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Pumo4g03355 248 MobiDBLite consensus disorder prediction 113 136 - -
Pumo4g03355 248 Pfam C2H2-type zinc finger 69 93 - -
Pumo4g03355 248 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Pumo4g03355 248 Gene3D Classic Zinc Finger 65 109 - -
Pumo4g03355 248 SMART c2h2final6 69 91 IPR013087 -
Pumo4g03355 248 PANTHER OS07G0101800 PROTEIN 45 245 - -
Pumo4g03355 248 SUPERFAMILY beta-beta-alpha zinc fingers 66 95 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03355 Pumo-Chr4 70914706 70915452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03355 45 244 C2H2 Transcription Factor Family AT3G23130 41.089 4.06e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g03355 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03355 - - var:108333719 374.785